Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC5.73□□□□□ -1.49
COL5A1P20908 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 AC089998.1-201ENST00000548575 3141 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL5A1P20908 RNA5SP183-201ENST00000362452 119 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 SNORA70H-201ENST00000383910 135 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 SNORA70J-201ENST00000384182 135 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 OR6E1P-201ENST00000414424 923 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 SDC4P-201ENST00000453285 601 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 FRG2FP-204ENST00000453982 852 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 RN7SL72P-201ENST00000460697 269 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
COL5A1P20908 AC109481.1-201ENST00000509173 282 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 CDH12P4-201ENST00000517835 295 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 CDH12P3-201ENST00000517935 295 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 CDH12P1-201ENST00000518435 295 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.73□□□□□ -1.49
COL5A1P20908 FCF1-203ENST00000553615 954 ntTSL 3 BASIC5.73□□□□□ -1.49
COL5A1P20908 SETP3-201ENST00000581726 813 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.73□□□□□ -1.49
COL5A1P20908 AC021766.1-201ENST00000624404 741 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.73□□□□□ -1.49
COL5A1P20908 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 AL353763.1-201ENST00000624467 1628 ntBASIC5.73□□□□□ -1.49
COL5A1P20908 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.73□□□□□ -1.49
COL5A1P20908 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC5.72□□□□□ -1.49
COL5A1P20908 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC5.72□□□□□ -1.49
COL5A1P20908 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL5A1P20908 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL5A1P20908 SNRPEP6-201ENST00000407465 277 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A1P20908 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A1P20908 AC007568.1-201ENST00000422912 471 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.72□□□□□ -1.49
COL5A1P20908 AC079922.1-201ENST00000443291 359 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.72□□□□□ -1.49
COL5A1P20908 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A1P20908 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A1P20908 SNORA43.3-201ENST00000517240 103 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 OR8G3P-201ENST00000533406 921 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.72□□□□□ -1.49
COL5A1P20908 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.72□□□□□ -1.49
COL5A1P20908 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.72□□□□□ -1.49
COL5A1P20908 uc_338.26-201ENST00000612659 160 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.72□□□□□ -1.49
COL5A1P20908 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 AC105749.1-201ENST00000631338 2008 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.72□□□□□ -1.49
COL5A1P20908 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A1P20908 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL5A1P20908 AC016583.1-201ENST00000624221 2431 ntBASIC5.72□□□□□ -1.49
COL5A1P20908 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
COL5A1P20908 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.71□□□□□ -1.49
COL5A1P20908 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
COL5A1P20908 AC103591.2-201ENST00000265259 766 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 SELENOWP1-201ENST00000322792 252 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
COL5A1P20908 AC099677.3-201ENST00000427081 395 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 HMGB3P24-201ENST00000433260 622 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.71□□□□□ -1.49
COL5A1P20908 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.71□□□□□ -1.49
COL5A1P20908 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.71□□□□□ -1.49
COL5A1P20908 CBX1P2-201ENST00000453841 458 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 RN7SL329P-201ENST00000467740 299 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 AC022215.1-201ENST00000481770 362 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 DUTP7-201ENST00000507982 486 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.71□□□□□ -1.49
COL5A1P20908 AC073916.1-201ENST00000545095 130 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.71□□□□□ -1.49
COL5A1P20908 AP002884.5-201ENST00000595053 1132 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.71□□□□□ -1.49
COL5A1P20908 AL683813.2-201ENST00000605245 502 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.71□□□□□ -1.49
COL5A1P20908 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms