Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL365220.1-201ENST00000432923 399 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 FMO7P-201ENST00000436045 768 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC011411.1-201ENST00000509592 876 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 MIR2117-201ENST00000516780 80 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 FCF1-203ENST00000553615 954 ntTSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 MRO-208ENST00000588444 866 ntTSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC7.71□□□□□ -1.18
COL3A1P02461 MIR6768-201ENST00000610734 72 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 AL133445.2-201ENST00000611191 527 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL3A1P02461 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
COL3A1P02461 GTF2IP4-201ENST00000453092 2054 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 ZNF840P-201ENST00000504759 1996 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
COL3A1P02461 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL3A1P02461 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.7□□□□□ -1.18
COL3A1P02461 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
COL3A1P02461 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL3A1P02461 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.7□□□□□ -1.18
COL3A1P02461 AL391422.1-201ENST00000402155 436 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC7.7□□□□□ -1.18
COL3A1P02461 AC113412.1-201ENST00000425840 504 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 YY1P1-201ENST00000427625 668 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 DEFA9P-201ENST00000433042 285 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
COL3A1P02461 AC073909.1-201ENST00000447112 999 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 OR7E116P-201ENST00000448529 957 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 AL121594.2-201ENST00000541658 472 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.7□□□□□ -1.18
COL3A1P02461 MIR4443-201ENST00000585052 53 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.7□□□□□ -1.18
COL3A1P02461 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL3A1P02461 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.7□□□□□ -1.18
COL3A1P02461 AC006206.1-201ENST00000544842 3387 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 MRE11P1-201ENST00000464884 2127 ntBASIC7.7□□□□□ -1.18
COL3A1P02461 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL3A1P02461 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
COL3A1P02461 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC7.69□□□□□ -1.18
COL3A1P02461 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 RN7SKP279-201ENST00000411383 298 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 AL662874.1-201ENST00000426065 230 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 HMGB3P24-201ENST00000433260 622 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 RPS3AP38-201ENST00000435889 763 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 AC023141.8-201ENST00000442554 208 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 EEF1B2P6-201ENST00000445713 673 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 RPS27AP2-201ENST00000457576 465 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 AC104109.1-201ENST00000498563 436 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 RNU6-615P-201ENST00000516065 106 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 HMGB1P42-201ENST00000532126 553 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 AC104695.2-201ENST00000605056 775 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 AC069234.4-201ENST00000621276 412 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 ATP5A1P4-201ENST00000556888 1605 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 LINC02019-201ENST00000608605 2060 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 MAPK10-338ENST00000641647 3362 ntBASIC7.69□□□□□ -1.18
COL3A1P02461 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.69□□□□□ -1.18
COL3A1P02461 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
COL3A1P02461 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL3A1P02461 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL3A1P02461 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 RNA5SP131-201ENST00000365452 119 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 RPS26P38-201ENST00000414476 348 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC092651.1-201ENST00000426110 312 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.68□□□□□ -1.18
COL3A1P02461 LYPLA1P1-201ENST00000434514 622 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 RN7SL717P-201ENST00000478343 297 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 RN7SL214P-201ENST00000487317 265 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC7.68□□□□□ -1.18
COL3A1P02461 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 AC006115.2-201ENST00000596823 202 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC7.68□□□□□ -1.18
COL3A1P02461 RN7SL787P-201ENST00000613000 284 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms