Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MTND4LP14-201ENST00000429447 288 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 GCA-203ENST00000429691 824 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 RPL14P5-201ENST00000436474 730 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 OSTCP2-201ENST00000437956 444 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 NDUFA12P1-201ENST00000455914 406 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 SRP68P2-201ENST00000456184 254 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC115223.1-201ENST00000466377 870 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 TUBBP11-201ENST00000472255 252 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 RNU6-334P-201ENST00000517072 102 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC024909.2-201ENST00000553035 286 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC010546.1-201ENST00000569391 485 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 MRPL45P2-203ENST00000573318 473 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC011193.2-201ENST00000582638 367 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 VN1R78P-201ENST00000597393 564 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 OR7A11P-201ENST00000597719 953 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC125494.3-201ENST00000602759 455 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC021851.1-201ENST00000608537 1082 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 MIR6829-201ENST00000620375 67 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC021422.1-201ENST00000621212 473 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 OR5BE1P-202ENST00000641168 1176 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC019072.1-201ENST00000604535 1551 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC005225.5-201ENST00000623547 2225 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AP002800.1-201ENST00000624982 2225 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC006511.3-201ENST00000624929 1783 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 TTC41P-205ENST00000551270 3963 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 EEF1A1P16-201ENST00000325349 1414 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 ST7-203ENST00000393443 2360 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 HMGB1P13-201ENST00000406019 642 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 RN7SKP263-201ENST00000411194 309 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 RNA5SP280-201ENST00000411230 115 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC244033.1-201ENST00000426826 870 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC007365.2-201ENST00000428806 458 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 C8orf59P1-201ENST00000429930 303 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC018804.1-201ENST00000430381 618 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 TRY2P-201ENST00000448860 689 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 RN7SL379P-201ENST00000479912 293 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC021220.1-201ENST00000507445 630 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 OR5BM1P-201ENST00000512021 366 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 OR5H7P-201ENST00000514084 930 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC011352.2-201ENST00000514574 1016 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 SNORA70.17-201ENST00000516449 133 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AP003355.1-201ENST00000518956 587 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 IGHVIII-25-1-201ENST00000522143 241 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 OR4A6P-201ENST00000534364 970 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC011447.2-201ENST00000592921 283 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC122710.3-201ENST00000606566 541 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AL352984.2-201ENST00000611153 546 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AK6-205ENST00000618980 483 ntTSL 2 BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms