Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RN7SL570P-201ENST00000484405 292 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 OR11I1P-201ENST00000486033 954 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 C1GALT1P3-201ENST00000522049 819 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 SPATA31D1-201ENST00000344803 4833 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AL359091.1-201ENST00000449048 1734 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 GIGYF2-204ENST00000409480 5976 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 UNC79-205ENST00000555664 8484 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 RNF41-201ENST00000345093 5596 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 NOTCH2-207ENST00000602566 5046 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 TEX14-202ENST00000349033 4773 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AF131215.2-201ENST00000531549 1710 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 CYP4F29P-201ENST00000420685 446 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 FRG2FP-204ENST00000453982 852 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 RPS23P7-201ENST00000466210 444 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 RN7SL41P-201ENST00000476144 297 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC091905.4-201ENST00000623432 202 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 GPR161-210ENST00000546300 7388 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 PPIP5K1-201ENST00000334933 5586 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC122718.1-201ENST00000439448 744 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC044797.1-201ENST00000445744 679 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 RPL23AP60-201ENST00000450011 454 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 FAM133DP-201ENST00000464802 691 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 BTF3P13-201ENST00000513224 490 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AC068790.7-201ENST00000602347 528 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 MYO15A-201ENST00000205890 11863 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 KIZ-AS1-203ENST00000616177 5370 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 RPL32P3-201ENST00000359025 275 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 BX119917.1-201ENST00000432517 502 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AL138878.2-201ENST00000440581 1241 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC012512.1-201ENST00000446594 718 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 SCARNA6.1-201ENST00000516989 238 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC139365.2-201ENST00000517972 253 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC011453.2-201ENST00000603737 729 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AL162431.4-201ENST00000604674 411 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC003992.1-201ENST00000635364 557 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 KIAA0355-201ENST00000299505 6717 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 TXNL1-201ENST00000217515 6894 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 ASPA-201ENST00000263080 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 RNU4ATAC-201ENST00000580972 127 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 OR52H1-202ENST00000641796 1061 ntBASIC5.62□□□□□ -1.51
VPS13AQ96RL7 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 ZBTB43-202ENST00000373464 5965 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS13AQ96RL7 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms