Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 RN7SL72P-201ENST00000460697 269 ntBASIC7.74□□□□□ -1.17
COL3A1P02461 RPS26P39-201ENST00000469206 341 ntBASIC7.74□□□□□ -1.17
COL3A1P02461 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.74□□□□□ -1.17
COL3A1P02461 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.74□□□□□ -1.17
COL3A1P02461 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC7.74□□□□□ -1.17
COL3A1P02461 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.73□□□□□ -1.17
COL3A1P02461 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 AC241584.2-201ENST00000637142 2090 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
COL3A1P02461 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.73□□□□□ -1.17
COL3A1P02461 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC7.73□□□□□ -1.17
COL3A1P02461 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 U3.25-201ENST00000391209 220 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 BX119321.1-201ENST00000428912 797 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 RPL31P15-201ENST00000449770 338 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 PPIAP20-201ENST00000449839 135 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.73□□□□□ -1.17
COL3A1P02461 IGLVIV-64-201ENST00000518581 301 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 IGHVIII-76-1-201ENST00000523776 286 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC7.73□□□□□ -1.17
COL3A1P02461 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC7.73□□□□□ -1.17
COL3A1P02461 MYL6-213ENST00000549017 502 ntTSL 3 BASIC7.73□□□□□ -1.17
COL3A1P02461 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 FAM27E4-201ENST00000605259 342 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 AC127024.6-201ENST00000621598 424 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC7.73□□□□□ -1.17
COL3A1P02461 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
COL3A1P02461 AC087565.3-203ENST00000641018 837 ntBASIC7.73□□□□□ -1.17
COL3A1P02461 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
COL3A1P02461 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL3A1P02461 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL3A1P02461 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL3A1P02461 RNA5SP46-201ENST00000362370 120 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 RNA5SP242-201ENST00000364171 118 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 AL022331.1-201ENST00000429025 477 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC7.72□□□□□ -1.17
COL3A1P02461 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC7.72□□□□□ -1.17
COL3A1P02461 AC022215.1-201ENST00000481770 362 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 OR7E157P-201ENST00000494376 911 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 RN7SL284P-201ENST00000498823 275 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.72□□□□□ -1.17
COL3A1P02461 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC7.72□□□□□ -1.17
COL3A1P02461 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC7.72□□□□□ -1.17
COL3A1P02461 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 AL352984.2-201ENST00000611153 546 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 MIR6886-201ENST00000619864 61 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 CU639417.4-201ENST00000623928 207 ntBASIC7.72□□□□□ -1.17
COL3A1P02461 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL3A1P02461 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC7.72□□□□□ -1.17
COL3A1P02461 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL3A1P02461 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL3A1P02461 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.72□□□□□ -1.17
COL3A1P02461 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL3A1P02461 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL3A1P02461 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.17
COL3A1P02461 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.17
COL3A1P02461 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.17
COL3A1P02461 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.71□□□□□ -1.17
COL3A1P02461 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.71□□□□□ -1.18
COL3A1P02461 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
COL3A1P02461 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL3A1P02461 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
COL3A1P02461 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.71□□□□□ -1.18
COL3A1P02461 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC7.71□□□□□ -1.18
COL3A1P02461 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
COL3A1P02461 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.71□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms