Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC120057.5-201ENST00000623840 154 ntBASIC6.32□□□□□ -1.4
LIMK1P53667 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.32□□□□□ -1.4
LIMK1P53667 MAPK10-350ENST00000641777 965 ntBASIC6.32□□□□□ -1.4
LIMK1P53667 AC015689.2-201ENST00000528172 1738 ntBASIC6.32□□□□□ -1.4
LIMK1P53667 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
LIMK1P53667 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMK1P53667 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMK1P53667 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIMK1P53667 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMK1P53667 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMK1P53667 RBPJP7-201ENST00000442803 1447 ntBASIC6.32□□□□□ -1.4
LIMK1P53667 RBPJP5-201ENST00000449433 1447 ntBASIC6.32□□□□□ -1.4
LIMK1P53667 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.32□□□□□ -1.4
LIMK1P53667 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.32□□□□□ -1.4
LIMK1P53667 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMK1P53667 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMK1P53667 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
LIMK1P53667 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMK1P53667 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.31□□□□□ -1.4
LIMK1P53667 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 AC018717.1-201ENST00000457712 1505 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 AC007342.5-201ENST00000571340 2142 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 RNA5SP333-201ENST00000363466 118 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 RNA5SP334-201ENST00000364825 118 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 CCL7-202ENST00000394627 696 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 MIR541-201ENST00000401360 84 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 RPL5P20-201ENST00000403848 896 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 AL627308.1-201ENST00000435693 821 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 AL355355.1-201ENST00000442900 793 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AC128716.1-201ENST00000475129 166 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AC091544.1-201ENST00000484702 348 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AL158068.1-201ENST00000506116 616 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 AC083906.1-201ENST00000509298 406 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.31□□□□□ -1.4
LIMK1P53667 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.31□□□□□ -1.4
LIMK1P53667 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.31□□□□□ -1.4
LIMK1P53667 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.31□□□□□ -1.4
LIMK1P53667 RPA2P1-201ENST00000556557 721 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 NPM1P5-201ENST00000557228 838 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.31□□□□□ -1.4
LIMK1P53667 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.31□□□□□ -1.4
LIMK1P53667 SNORD95-201ENST00000579879 68 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AC004477.3-201ENST00000614061 590 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AP001885.1-201ENST00000621658 558 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
LIMK1P53667 AC013488.1-201ENST00000526618 1838 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
LIMK1P53667 AC110373.1-201ENST00000505994 3505 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 AC073429.2-201ENST00000569694 1444 ntBASIC6.31□□□□□ -1.4
LIMK1P53667 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
LIMK1P53667 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.31□□□□□ -1.4
LIMK1P53667 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
LIMK1P53667 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
LIMK1P53667 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMK1P53667 AC007114.2-201ENST00000576014 4281 ntBASIC6.3□□□□□ -1.4
LIMK1P53667 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
LIMK1P53667 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMK1P53667 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMK1P53667 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMK1P53667 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMK1P53667 BIN2P1-201ENST00000504996 1530 ntBASIC6.3□□□□□ -1.4
LIMK1P53667 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMK1P53667 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMK1P53667 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMK1P53667 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMK1P53667 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.3□□□□□ -1.4
LIMK1P53667 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
LIMK1P53667 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMK1P53667 AL033543.1-201ENST00000623440 13454 ntBASIC6.3□□□□□ -1.4
LIMK1P53667 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 271.1 ms