Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TMEM97P2-201ENST00000517841 403 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 PVT1-214ENST00000522875 922 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC5.27□□□□□ -1.57
HOXA1P49639 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.27□□□□□ -1.57
HOXA1P49639 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA1P49639 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA1P49639 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA1P49639 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA1P49639 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 MTND4LP25-201ENST00000570218 163 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA1P49639 FAM60CP-201ENST00000591086 664 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA1P49639 AC098483.2-201ENST00000603158 454 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 MIR6726-201ENST00000613751 61 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AL122125.1-201ENST00000616999 600 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AL356490.1-201ENST00000623079 479 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AL078621.3-201ENST00000623707 2042 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AC106782.7-201ENST00000624024 418 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AC018692.2-201ENST00000624130 348 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AC133555.5-201ENST00000624430 418 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA1P49639 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 AC006453.5-201ENST00000636451 619 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 AC243725.1-201ENST00000637164 436 ntBASIC5.27□□□□□ -1.57
HOXA1P49639 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA1P49639 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA1P49639 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA1P49639 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA1P49639 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA1P49639 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HOXA1P49639 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXA1P49639 AL136984.1-201ENST00000607611 1893 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXA1P49639 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXA1P49639 AL080312.1-201ENST00000256654 824 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 RNA5SP176-201ENST00000390956 110 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HOXA1P49639 AL359694.1-201ENST00000403247 604 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
HOXA1P49639 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.26□□□□□ -1.57
HOXA1P49639 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 GRPEL2P2-201ENST00000421856 670 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXA1P49639 PUDPP2-201ENST00000431423 643 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 FECHP1-201ENST00000431896 1214 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 SCAND3P1-201ENST00000439854 1060 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 ST13P21-201ENST00000453250 1098 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 OR7E7P-201ENST00000455678 1012 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC023424.1-201ENST00000496058 459 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 SCG5-207ENST00000497208 949 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXA1P49639 SETP12-201ENST00000514068 805 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXA1P49639 OR4A42P-201ENST00000531397 938 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AL162632.2-201ENST00000553933 399 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AL390334.1-201ENST00000556395 450 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AL132640.1-201ENST00000559594 619 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 ONECUT1-202ENST00000560699 996 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXA1P49639 DPRXP4-201ENST00000578053 568 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC011193.2-201ENST00000582638 367 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 MIR4428-201ENST00000584884 73 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC018809.2-201ENST00000602436 3823 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AC040174.2-201ENST00000602701 465 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 OR4H6P-202ENST00000603819 340 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 BNIP3P35-201ENST00000604530 490 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXA1P49639 AC012510.1-201ENST00000607946 759 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA1P49639 AC007342.5-201ENST00000571340 2142 ntBASIC5.26□□□□□ -1.57
HOXA1P49639 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXA1P49639 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms