Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC005840.2-201ENST00000447193 355 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 FGF7P3-201ENST00000454645 303 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 YAP1P2-201ENST00000455104 610 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 RPL7L1P3-201ENST00000455249 689 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC022364.2-201ENST00000457963 554 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC013787.1-201ENST00000460165 307 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC092757.1-201ENST00000467293 467 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC105918.1-201ENST00000474399 838 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC7.04□□□□□ -1.28
COL8A1P27658 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC7.04□□□□□ -1.28
COL8A1P27658 RN7SL104P-201ENST00000498686 293 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC108516.2-201ENST00000508163 349 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 LINC01438-201ENST00000512794 556 ntTSL 4 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 MTND1P35-201ENST00000526739 508 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
COL8A1P27658 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 CCDC32-203ENST00000558113 576 ntTSL 3 BASIC7.04□□□□□ -1.28
COL8A1P27658 CCDC32-210ENST00000559911 677 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC008770.1-206ENST00000589551 523 ntTSL 3 BASIC7.04□□□□□ -1.28
COL8A1P27658 AL589765.5-201ENST00000596133 515 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC009220.3-201ENST00000604318 586 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 AP001506.1-201ENST00000615444 211 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC093909.6-201ENST00000624757 775 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 MIR3662-201ENST00000637030 95 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
COL8A1P27658 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 SP140-201ENST00000343805 2910 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 BRDT-203ENST00000370389 3696 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 MTHFD1-201ENST00000216605 3136 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 AF121897.1-201ENST00000411867 3980 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC131392.2-201ENST00000505635 4332 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AL391261.1-201ENST00000555712 1479 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 TDP1-203ENST00000393454 2068 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 LRTOMT-203ENST00000324866 2402 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 IL2RA-202ENST00000379954 1562 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 MEIS1-216ENST00000560281 2773 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 ZNF701-201ENST00000301093 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC009220.2-201ENST00000489759 1751 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 FAM107B-201ENST00000181796 3785 ntTSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 FBXO36-201ENST00000283946 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 TOM1L1-203ENST00000536554 1522 ntTSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC092329.4-202ENST00000638174 1989 ntTSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 OFCC1-201ENST00000316020 863 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL8A1P27658 Y_RNA.133-201ENST00000363428 110 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 HMGB3P1-201ENST00000393368 573 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 HMGB1P10-201ENST00000395823 563 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 MRPL32P1-201ENST00000406301 247 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 RNU2-17P-201ENST00000410290 190 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 RPS26P38-201ENST00000414476 348 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 HMGB3P23-201ENST00000414981 585 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 USP9YP27-201ENST00000418455 438 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC7.03□□□□□ -1.28
COL8A1P27658 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC009237.2-201ENST00000421358 284 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 FABP5P1-201ENST00000423401 411 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 TAAR7P-201ENST00000436141 242 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AL138899.2-201ENST00000439139 499 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 RPS7P4-201ENST00000444127 582 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 PPIAP32-201ENST00000449940 472 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AC092634.4-203ENST00000451395 448 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AL590369.1-201ENST00000455074 470 ntTSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 AL133480.2-201ENST00000456723 487 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 WBP1LP1-201ENST00000460451 896 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AC116353.1-201ENST00000489727 316 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AC113208.1-201ENST00000497944 318 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AC006070.1-201ENST00000508151 193 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AC008837.2-201ENST00000513076 418 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC026801.2-201ENST00000515352 425 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
COL8A1P27658 AP001893.2-201ENST00000526949 202 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 AP000781.1-201ENST00000534162 311 ntTSL 3 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC7.03□□□□□ -1.28
COL8A1P27658 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 AC008055.1-201ENST00000547032 609 ntBASIC7.03□□□□□ -1.28
COL8A1P27658 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.03□□□□□ -1.28
COL8A1P27658 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms