Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
NKX3-1Q99801 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.4□□□□□ -1.55
NKX3-1Q99801 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.55
NKX3-1Q99801 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
NKX3-1Q99801 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
NKX3-1Q99801 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
NKX3-1Q99801 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
NKX3-1Q99801 AC027279.1-201ENST00000568885 4284 ntBASIC5.4□□□□□ -1.55
NKX3-1Q99801 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 RNU1-84P-201ENST00000365447 164 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 SNORA70.9-201ENST00000384370 135 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MTND3P20-201ENST00000407663 186 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 RN7SKP146-201ENST00000410242 334 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC015977.1-201ENST00000418887 292 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC079922.1-201ENST00000443291 359 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 DNAJC19P5-201ENST00000443295 316 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AL445991.1-201ENST00000450381 475 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AKR1D1P1-201ENST00000457236 936 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 MTCYBP14-201ENST00000457471 715 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC018645.1-201ENST00000505003 109 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC078878.1-201ENST00000539832 958 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MIR132-201ENST00000591554 101 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AL049840.6-201ENST00000604583 345 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC009237.12-201ENST00000604755 742 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC091167.5-201ENST00000605689 894 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC100814.1-201ENST00000606963 623 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC239803.2-201ENST00000610161 430 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 MIR6780B-201ENST00000610307 79 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC022106.1-201ENST00000612834 766 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 MTCO1P1-201ENST00000624263 1081 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC003992.1-201ENST00000635364 557 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 OR7A1P-202ENST00000641542 1158 ntBASIC5.39□□□□□ -1.55
NKX3-1Q99801 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
NKX3-1Q99801 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NKX3-1Q99801 AC092070.2-203ENST00000598377 3644 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 RNU1-5P-201ENST00000362684 144 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 SNORA64.3-201ENST00000365647 134 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 HMGA1P8-201ENST00000414130 321 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 GAPDHP19-201ENST00000431768 1005 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms