Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORA70J-201ENST00000384182 135 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A4P53420 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A4P53420 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A4P53420 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.36□□□□□ -1.39
COL4A4P53420 SNORA43.3-201ENST00000517240 103 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 IGLV3-30-201ENST00000524362 298 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A4P53420 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A4P53420 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 TAS2R6P-201ENST00000605022 826 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AC004890.3-201ENST00000605566 1095 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 RNU105B-201ENST00000364478 208 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 SNRPEP6-201ENST00000407465 277 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 METTL15P3-201ENST00000415522 1221 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 TNPO1P1-201ENST00000423641 1138 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 HMGB3P24-201ENST00000433260 622 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC6.35□□□□□ -1.39
COL4A4P53420 SDC4P-201ENST00000453285 601 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 CBX1P5-201ENST00000475330 559 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 RPS3AP15-201ENST00000483874 781 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A4P53420 AP001784.1-201ENST00000624107 428 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 AC089998.1-201ENST00000548575 3141 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A4P53420 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.35□□□□□ -1.39
COL4A4P53420 MAPK10-304ENST00000641341 3984 ntBASIC6.35□□□□□ -1.39
COL4A4P53420 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL4A4P53420 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL4A4P53420 CASC19-243ENST00000641588 1546 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.34□□□□□ -1.39
COL4A4P53420 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
COL4A4P53420 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COL4A4P53420 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 SNORD8-201ENST00000363915 110 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 SNORA56-201ENST00000383966 129 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 AL589647.1-201ENST00000402485 466 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 MIR1286-201ENST00000408112 78 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 SNORA11-201ENST00000408789 128 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 RN7SKP273-201ENST00000411392 314 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A4P53420 RPL12P3-201ENST00000440080 396 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A4P53420 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 RN7SL57P-201ENST00000493687 290 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 AC024558.1-201ENST00000505008 528 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 HMGN2P6-201ENST00000551091 273 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A4P53420 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.34□□□□□ -1.39
COL4A4P53420 RNU4ATAC-201ENST00000580972 127 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.34□□□□□ -1.39
COL4A4P53420 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC6.34□□□□□ -1.39
COL4A4P53420 AL512329.2-201ENST00000607350 548 ntBASIC6.34□□□□□ -1.39
COL4A4P53420 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms