Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GSTA7P-201ENST00000438425 448 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC015983.1-201ENST00000441577 373 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC087672.1-201ENST00000479876 766 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 OR51K1P-201ENST00000510214 950 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 AC137768.1-201ENST00000549998 553 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 HSPE1P2-201ENST00000554777 306 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 MIR4330-201ENST00000579077 105 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 MIR4697-201ENST00000582977 78 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 API5-210ENST00000534600 1760 ntTSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 GTF2IP4-201ENST00000453092 2054 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 RN7SKP213-201ENST00000410746 298 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 RPS23P9-201ENST00000448848 438 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC7.17□□□□□ -1.26
BRCA1P38398 AL049872.1-201ENST00000556323 322 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 RBM22P1-201ENST00000578589 1214 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.17□□□□□ -1.26
BRCA1P38398 AC104785.1-201ENST00000603220 588 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 AL139099.4-201ENST00000614802 114 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.17□□□□□ -1.26
BRCA1P38398 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC7.16□□□□□ -1.26
BRCA1P38398 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.16□□□□□ -1.26
BRCA1P38398 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
BRCA1P38398 RNA5SP478-201ENST00000364657 115 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 RNU1-77P-201ENST00000390868 162 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 RBMY2QP-201ENST00000429799 1147 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.16□□□□□ -1.26
BRCA1P38398 AC005297.1-201ENST00000444765 862 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.16□□□□□ -1.26
BRCA1P38398 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.16□□□□□ -1.26
BRCA1P38398 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.16□□□□□ -1.26
BRCA1P38398 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.16□□□□□ -1.26
BRCA1P38398 RBM22P12-201ENST00000567098 1255 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 MIR4646-201ENST00000580775 63 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 AC022726.2-201ENST00000634673 547 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC7.16□□□□□ -1.26
BRCA1P38398 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
BRCA1P38398 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
BRCA1P38398 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.16□□□□□ -1.26
BRCA1P38398 AC096921.2-201ENST00000561507 1916 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 AC011369.2-201ENST00000624423 1567 ntBASIC7.16□□□□□ -1.26
BRCA1P38398 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
BRCA1P38398 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
BRCA1P38398 AL159987.1-201ENST00000347911 293 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 RNVU1-6-201ENST00000364688 164 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC7.15□□□□□ -1.26
BRCA1P38398 RPL26P29-201ENST00000415623 438 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.15□□□□□ -1.26
BRCA1P38398 AC072052.1-201ENST00000496556 306 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 AC095057.1-201ENST00000507583 168 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.15□□□□□ -1.26
BRCA1P38398 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.15□□□□□ -1.26
BRCA1P38398 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.15□□□□□ -1.26
BRCA1P38398 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC7.15□□□□□ -1.26
BRCA1P38398 AC074050.1-201ENST00000563247 211 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms