Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL6A1P12109 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 AC083806.2-201ENST00000617795 2685 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 AMELX-201ENST00000348912 737 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 SUGT1P2-201ENST00000379452 992 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
COL6A1P12109 RN7SKP296-201ENST00000411185 341 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 AC098592.2-201ENST00000413158 265 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 MTND2P16-201ENST00000419987 799 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 RPL12P43-201ENST00000420608 499 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 AC073508.1-201ENST00000428866 656 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 MTND4LP14-201ENST00000429447 288 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 NDUFA5P1-201ENST00000433858 341 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 MTND5P8-201ENST00000449817 1083 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 RN7SL284P-201ENST00000498823 275 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 SNX18P24-201ENST00000505249 671 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC7.29□□□□□ -1.24
COL6A1P12109 AC119751.5-201ENST00000514077 770 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 MRPS21P8-201ENST00000569196 235 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC7.29□□□□□ -1.24
COL6A1P12109 AC087575.1-201ENST00000585087 229 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC7.29□□□□□ -1.24
COL6A1P12109 RNU6-84P-201ENST00000607737 102 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC7.29□□□□□ -1.24
COL6A1P12109 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 IGKV2OR2-10-201ENST00000613976 311 ntBASIC7.29□□□□□ -1.24
COL6A1P12109 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC7.29□□□□□ -1.24
COL6A1P12109 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
COL6A1P12109 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL6A1P12109 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
COL6A1P12109 OFD1P10Y-201ENST00000434110 1433 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 ERMN-202ENST00000409216 746 ntTSL 4 BASIC7.28□□□□□ -1.24
COL6A1P12109 RNA5SP178-201ENST00000410380 128 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 AL365338.1-201ENST00000422282 858 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 AC092634.2-201ENST00000428146 1010 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 EMC3-AS1-205ENST00000438698 534 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC004854.1-201ENST00000440356 349 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AL645936.1-201ENST00000441979 518 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AL590004.3-202ENST00000445883 451 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC7.28□□□□□ -1.24
COL6A1P12109 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC7.28□□□□□ -1.24
COL6A1P12109 MTND2P8-201ENST00000450555 1025 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC7.28□□□□□ -1.24
COL6A1P12109 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC7.28□□□□□ -1.24
COL6A1P12109 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC7.28□□□□□ -1.24
COL6A1P12109 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 AC026826.1-201ENST00000493002 361 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 AC105313.1-201ENST00000509121 353 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms