Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 OR10R3P-201ENST00000361688 942 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 YWHAZP4-201ENST00000392459 708 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 MEAF6P1-201ENST00000416092 327 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 RPL7AP14-201ENST00000424041 802 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC128677.1-201ENST00000436016 442 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 RPSAP40-201ENST00000442343 891 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC093815.1-201ENST00000508637 280 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC136777.2-201ENST00000522979 358 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 TDGP1-201ENST00000543961 1229 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AP001823.1-201ENST00000604056 1003 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AL355974.3-201ENST00000617383 467 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC099654.15-201ENST00000639802 509 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC130304.1-201ENST00000622942 2385 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC087516.1-201ENST00000561236 2428 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 EIF3EP1-201ENST00000433978 1316 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC42Q96M95 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 AC217777.1-201ENST00000570034 1471 ntBASIC6.47□□□□□ -1.37
CCDC42Q96M95 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.46□□□□□ -1.37
CCDC42Q96M95 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.37
CCDC42Q96M95 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC42Q96M95 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 RNA5SP156-201ENST00000410250 110 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 SDC4P-201ENST00000453285 601 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 RSU1P1-201ENST00000453416 441 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC063955.1-201ENST00000462872 685 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC079080.1-201ENST00000479841 822 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 RNA5SP434-201ENST00000516647 121 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 OR56A7P-201ENST00000524865 941 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 SLC25A51P2-201ENST00000535708 889 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC093524.1-201ENST00000564266 1094 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC060780.2-201ENST00000589047 198 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC006115.2-201ENST00000596823 202 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 AC025857.2-201ENST00000602711 238 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 uc_338.26-201ENST00000612659 160 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 MIR6070-201ENST00000613967 103 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC42Q96M95 AL355834.1-201ENST00000556602 3965 ntBASIC6.46□□□□□ -1.38
CCDC42Q96M95 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC42Q96M95 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms