Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC007494.1-201ENST00000562293 760 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC005632.2-201ENST00000564271 828 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC105036.1-201ENST00000566222 271 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AL139041.1-201ENST00000605480 610 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC024589.2-201ENST00000605642 1294 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 RNA5SP439-201ENST00000617595 124 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC048341.3-201ENST00000619323 491 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC010325.3-201ENST00000641084 394 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 LINC01616-201ENST00000561816 2280 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 SAMM50P1-201ENST00000455403 1399 ntBASIC5.51□□□□□ -1.53
SKA3Q8IX90 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SKA3Q8IX90 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SKA3Q8IX90 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 RN7SKP121-201ENST00000410842 305 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 RN7SKP161-201ENST00000411110 305 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 RNA5SP115-201ENST00000411160 107 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 RPSAP32-201ENST00000432681 526 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC094019.1-201ENST00000434678 472 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC010086.1-201ENST00000437359 1052 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 OR13K1P-201ENST00000444577 975 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 RANP2-201ENST00000456833 229 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC098818.1-201ENST00000478593 252 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC138207.8-204ENST00000579588 527 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC011500.1-201ENST00000601963 469 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 AP001267.4-201ENST00000602598 545 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 AC016252.1-201ENST00000609721 474 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.5□□□□□ -1.53
SKA3Q8IX90 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SKA3Q8IX90 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SKA3Q8IX90 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms