Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA3P55318 MIR4685-201ENST00000578185 69 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 STARD6-204ENST00000584040 660 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA3P55318 SNORA74.4-201ENST00000607595 199 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 SNX18P12-201ENST00000624821 759 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
FOXA3P55318 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
FOXA3P55318 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
FOXA3P55318 OR7A2P-201ENST00000304105 930 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 RN7SKP81-201ENST00000365603 331 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 AC087752.1-201ENST00000391360 558 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 SNORA11D-201ENST00000408548 128 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 SNORA11E-201ENST00000408778 128 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 LINC02470-201ENST00000412084 979 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC003087.1-201ENST00000412828 499 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 AL390866.1-201ENST00000425137 469 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 CRIP1P1-201ENST00000427567 185 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 C5orf24-203ENST00000435259 851 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 PHBP4-201ENST00000437447 837 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 FAM177B-204ENST00000445590 1096 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 AL121578.2-201ENST00000448797 447 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 RARRES2P3-201ENST00000457739 473 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 RPS26P24-201ENST00000497656 331 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC4.49□□□□□ -1.69
FOXA3P55318 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC019322.1-201ENST00000571869 389 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA3P55318 PPIAP14-201ENST00000577627 496 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AC027216.1-201ENST00000577726 685 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC002069.2-201ENST00000603580 883 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AC141002.1-201ENST00000607025 279 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 RN7SL261P-201ENST00000613441 282 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 AC010998.3-201ENST00000613871 631 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 TEX41-271ENST00000628213 993 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 AC010132.4-201ENST00000569883 1368 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA3P55318 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 AP001029.2-203ENST00000589795 4910 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 SLC2A3P4-201ENST00000521259 1471 ntBASIC4.49□□□□□ -1.69
FOXA3P55318 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
FOXA3P55318 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA3P55318 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA3P55318 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA3P55318 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.48□□□□□ -1.69
FOXA3P55318 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
FOXA3P55318 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC4.48□□□□□ -1.69
FOXA3P55318 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
FOXA3P55318 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA3P55318 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
FOXA3P55318 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA3P55318 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms