Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC9.87□□□□□ -0.83
CUX1P39880 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 NCOA4P3-201ENST00000513203 1877 ntBASIC9.87□□□□□ -0.83
CUX1P39880 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC9.87□□□□□ -0.83
CUX1P39880 ALB-209ENST00000503124 1741 ntTSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 COL6A4P1-202ENST00000487147 4317 ntBASIC9.87□□□□□ -0.83
CUX1P39880 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 AOX3P-204ENST00000491025 2107 ntBASIC9.87□□□□□ -0.83
CUX1P39880 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 MITF-203ENST00000328528 4680 ntTSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 OR7E116P-201ENST00000448529 957 ntBASIC9.87□□□□□ -0.83
CUX1P39880 RN7SL165P-201ENST00000477476 291 ntBASIC9.87□□□□□ -0.83
CUX1P39880 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC9.87□□□□□ -0.83
CUX1P39880 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC9.87□□□□□ -0.83
CUX1P39880 AC244502.2-201ENST00000543361 851 ntBASIC9.87□□□□□ -0.83
CUX1P39880 HAUS8P1-201ENST00000549005 542 ntBASIC9.87□□□□□ -0.83
CUX1P39880 AC116651.1-201ENST00000609724 556 ntBASIC9.87□□□□□ -0.83
CUX1P39880 AL139407.1-201ENST00000613826 1175 ntBASIC9.87□□□□□ -0.83
CUX1P39880 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC9.87□□□□□ -0.83
CUX1P39880 FTO-215ENST00000636491 1676 ntTSL 5 BASIC9.86□□□□□ -0.83
CUX1P39880 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC9.86□□□□□ -0.83
CUX1P39880 AC087516.1-201ENST00000561236 2428 ntBASIC9.86□□□□□ -0.83
CUX1P39880 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC9.86□□□□□ -0.83
CUX1P39880 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC9.86□□□□□ -0.83
CUX1P39880 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC9.86□□□□□ -0.83
CUX1P39880 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC9.86□□□□□ -0.83
CUX1P39880 AC245047.2-201ENST00000441060 530 ntBASIC9.86□□□□□ -0.83
CUX1P39880 AC015983.1-201ENST00000441577 373 ntBASIC9.86□□□□□ -0.83
CUX1P39880 AC004129.2-201ENST00000457229 287 ntBASIC9.86□□□□□ -0.83
CUX1P39880 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC9.86□□□□□ -0.83
CUX1P39880 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC9.86□□□□□ -0.83
CUX1P39880 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC9.86□□□□□ -0.83
CUX1P39880 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC9.86□□□□□ -0.83
CUX1P39880 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
CUX1P39880 FBXL21-201ENST00000297158 1305 ntBASIC9.86□□□□□ -0.83
CUX1P39880 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC9.85□□□□□ -0.83
CUX1P39880 RMST-210ENST00000640149 2844 ntTSL 5 BASIC9.85□□□□□ -0.83
CUX1P39880 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC9.85□□□□□ -0.83
CUX1P39880 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
CUX1P39880 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
CUX1P39880 RNA5SP443-201ENST00000363083 132 ntBASIC9.85□□□□□ -0.83
CUX1P39880 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC9.85□□□□□ -0.83
CUX1P39880 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
CUX1P39880 METTL15P3-201ENST00000415522 1221 ntBASIC9.85□□□□□ -0.83
CUX1P39880 AC019185.1-201ENST00000442718 389 ntBASIC9.85□□□□□ -0.83
CUX1P39880 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC9.85□□□□□ -0.83
CUX1P39880 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC9.85□□□□□ -0.83
CUX1P39880 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC9.85□□□□□ -0.83
CUX1P39880 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC9.85□□□□□ -0.83
CUX1P39880 AC007494.1-201ENST00000562293 760 ntBASIC9.85□□□□□ -0.83
CUX1P39880 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC9.85□□□□□ -0.83
CUX1P39880 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC9.85□□□□□ -0.83
CUX1P39880 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC9.85□□□□□ -0.83
CUX1P39880 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
CUX1P39880 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
CUX1P39880 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
CUX1P39880 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC9.85□□□□□ -0.83
CUX1P39880 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC9.85□□□□□ -0.83
CUX1P39880 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
CUX1P39880 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
CUX1P39880 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC9.84□□□□□ -0.83
CUX1P39880 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC9.84□□□□□ -0.83
CUX1P39880 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
CUX1P39880 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
CUX1P39880 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
CUX1P39880 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
CUX1P39880 RNA5SP507-201ENST00000363603 121 ntBASIC9.84□□□□□ -0.83
CUX1P39880 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
CUX1P39880 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC9.84□□□□□ -0.83
CUX1P39880 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC9.84□□□□□ -0.83
CUX1P39880 AL133173.1-201ENST00000423458 397 ntBASIC9.84□□□□□ -0.83
CUX1P39880 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC9.84□□□□□ -0.83
CUX1P39880 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
CUX1P39880 CBX1P5-201ENST00000475330 559 ntBASIC9.84□□□□□ -0.83
CUX1P39880 EIF1P7-201ENST00000487533 337 ntBASIC9.84□□□□□ -0.83
CUX1P39880 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
CUX1P39880 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
CUX1P39880 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC9.84□□□□□ -0.83
CUX1P39880 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC9.84□□□□□ -0.83
CUX1P39880 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms