Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP000550.3-201ENST00000637734 379 ntBASIC7.14□□□□□ -1.27
SCN4AP35499 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
SCN4AP35499 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC7.14□□□□□ -1.27
SCN4AP35499 AC110373.1-201ENST00000505994 3505 ntBASIC7.14□□□□□ -1.27
SCN4AP35499 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 AC079753.1-201ENST00000623243 3868 ntBASIC7.14□□□□□ -1.27
SCN4AP35499 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
SCN4AP35499 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.14□□□□□ -1.27
SCN4AP35499 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 HMGA1P8-201ENST00000414130 321 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 VN1R54P-201ENST00000435210 1049 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 AC104164.1-201ENST00000460282 590 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 RPL35AP19-201ENST00000469425 329 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 SNORA58-201ENST00000505219 137 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC096754.1-201ENST00000508904 818 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SCN4AP35499 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 CYP4Z2P-201ENST00000423332 1512 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.13□□□□□ -1.27
SCN4AP35499 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.13□□□□□ -1.27
SCN4AP35499 PARP4P2-201ENST00000446672 3326 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SCN4AP35499 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC7.13□□□□□ -1.27
SCN4AP35499 MIR433-201ENST00000384837 93 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 AC005042.1-201ENST00000393397 800 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 SNRPEP6-201ENST00000407465 277 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 AL139128.1-201ENST00000413921 941 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 VDAC1P6-201ENST00000430062 855 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC083795.1-201ENST00000491760 320 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.13□□□□□ -1.27
SCN4AP35499 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC7.13□□□□□ -1.27
SCN4AP35499 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.13□□□□□ -1.27
SCN4AP35499 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC7.13□□□□□ -1.27
SCN4AP35499 CYCSP1-201ENST00000604815 315 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.13□□□□□ -1.27
SCN4AP35499 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
SCN4AP35499 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.12□□□□□ -1.27
SCN4AP35499 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
SCN4AP35499 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
SCN4AP35499 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.12□□□□□ -1.27
SCN4AP35499 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC7.12□□□□□ -1.27
SCN4AP35499 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 U8.4-201ENST00000363626 134 ntBASIC7.12□□□□□ -1.27
SCN4AP35499 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.12□□□□□ -1.27
SCN4AP35499 HMGB1P42-201ENST00000532126 553 ntBASIC7.12□□□□□ -1.27
SCN4AP35499 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.12□□□□□ -1.27
SCN4AP35499 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.12□□□□□ -1.27
SCN4AP35499 FKBP1AP1-201ENST00000594588 318 ntBASIC7.12□□□□□ -1.27
SCN4AP35499 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
SCN4AP35499 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
SCN4AP35499 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
SCN4AP35499 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SCN4AP35499 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.11□□□□□ -1.27
SCN4AP35499 GUCY1B2-204ENST00000531898 1979 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AC007938.2-201ENST00000604666 2634 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms