Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC074029.3-201ENST00000618623 312 ntBASIC7.43□□□□□ -1.22
MSX1P28360 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 SLC2A14-215ENST00000542546 3120 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 C15orf41-214ENST00000569302 1325 ntAPPRIS ALT1 TSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
MSX1P28360 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 ATP1A2-202ENST00000392233 3338 ntTSL 5 BASIC7.43□□□□□ -1.22
MSX1P28360 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 EEF1A1P20-201ENST00000514852 1386 ntBASIC7.43□□□□□ -1.22
MSX1P28360 MFSD8-207ENST00000513559 1813 ntTSL 2 BASIC7.43□□□□□ -1.22
MSX1P28360 ZNF544-201ENST00000269829 3547 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 PIWIL3-201ENST00000332271 3504 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 CTNNA1-210ENST00000518825 3536 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSX1P28360 MED1-202ENST00000394287 2870 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 AC097634.1-201ENST00000604491 2467 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AL008638.3-201ENST00000623027 5182 ntBASIC7.42□□□□□ -1.22
MSX1P28360 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 MAPK10-345ENST00000641724 2980 ntAPPRIS P2 BASIC7.42□□□□□ -1.22
MSX1P28360 DHFR2-201ENST00000314636 3927 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 ZNF781-201ENST00000358582 3147 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 PTER-203ENST00000423462 3212 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 RNU6-534P-201ENST00000364877 106 ntBASIC7.42□□□□□ -1.22
MSX1P28360 RNA5SP427-201ENST00000365323 119 ntBASIC7.42□□□□□ -1.22
MSX1P28360 Y_RNA.529-201ENST00000384586 119 ntBASIC7.42□□□□□ -1.22
MSX1P28360 RNU6-297P-201ENST00000384636 107 ntBASIC7.42□□□□□ -1.22
MSX1P28360 IGHV4-34-201ENST00000390616 400 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
MSX1P28360 MTCO3P40-201ENST00000392516 676 ntBASIC7.42□□□□□ -1.22
MSX1P28360 OR4E2-201ENST00000408935 942 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
MSX1P28360 AL354751.2-201ENST00000415471 210 ntBASIC7.42□□□□□ -1.22
MSX1P28360 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC7.42□□□□□ -1.22
MSX1P28360 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC7.42□□□□□ -1.22
MSX1P28360 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 AL139135.2-201ENST00000445040 433 ntBASIC7.42□□□□□ -1.22
MSX1P28360 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 VDAC2P4-201ENST00000452925 711 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 PMCHL2-203ENST00000457791 237 ntBASIC7.42□□□□□ -1.22
MSX1P28360 H3F3AP5-201ENST00000475267 429 ntBASIC7.42□□□□□ -1.22
MSX1P28360 RN7SL314P-201ENST00000490735 292 ntBASIC7.42□□□□□ -1.22
MSX1P28360 LEMD1-208ENST00000495594 637 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 AC136424.1-201ENST00000518425 542 ntTSL 4 BASIC7.42□□□□□ -1.22
MSX1P28360 AC104211.2-201ENST00000521317 436 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 AC008708.2-201ENST00000522956 1124 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 OR4A7P-201ENST00000531463 910 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AP003119.1-201ENST00000533437 538 ntTSL 4 BASIC7.42□□□□□ -1.22
MSX1P28360 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 STH-201ENST00000537309 445 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
MSX1P28360 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 ULK4P2-202ENST00000564187 492 ntBASIC7.42□□□□□ -1.22
MSX1P28360 FLJ21408-204ENST00000566854 601 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 AC105275.2-201ENST00000567907 711 ntBASIC7.42□□□□□ -1.22
MSX1P28360 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC7.42□□□□□ -1.22
MSX1P28360 RN7SL154P-201ENST00000578043 324 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AC018521.6-201ENST00000584276 335 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC7.42□□□□□ -1.22
MSX1P28360 AC010323.2-201ENST00000596405 594 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AC233280.2-201ENST00000603917 1070 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AC008277.2-201ENST00000605196 797 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC7.42□□□□□ -1.22
MSX1P28360 AC084876.1-201ENST00000612793 641 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AL359880.1-201ENST00000621879 266 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AC120349.2-201ENST00000625002 298 ntBASIC7.42□□□□□ -1.22
MSX1P28360 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC7.42□□□□□ -1.22
MSX1P28360 AL359834.1-201ENST00000635660 638 ntTSL 4 BASIC7.42□□□□□ -1.22
MSX1P28360 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
MSX1P28360 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 EEF1A1P12-201ENST00000443590 1346 ntBASIC7.42□□□□□ -1.22
MSX1P28360 PCDH18-205ENST00000511115 1331 ntTSL 2 BASIC7.42□□□□□ -1.22
MSX1P28360 AC109315.1-201ENST00000584143 1347 ntBASIC7.42□□□□□ -1.22
MSX1P28360 CASR-201ENST00000490131 4015 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 DDX24-211ENST00000640432 2580 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 WASF4P-201ENST00000444248 1494 ntBASIC7.42□□□□□ -1.22
MSX1P28360 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 KLHL8-202ENST00000425278 4049 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 RXFP1-207ENST00000470033 2175 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC7.42□□□□□ -1.22
MSX1P28360 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC7.42□□□□□ -1.22
MSX1P28360 RAB27A-202ENST00000396307 3459 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 DUXAP8-204ENST00000447898 4136 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSX1P28360 ZNF45-206ENST00000615985 2912 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms