Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 HMGN2P47-201ENST00000559378 272 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 GLYATL1P2-202ENST00000588046 902 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 AC020916.2-201ENST00000591242 360 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 MIR132-201ENST00000591554 101 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 AL359091.2-201ENST00000609303 556 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 DRG1-207ENST00000629688 309 ntTSL 5 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 AL133243.2-201ENST00000610331 1621 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 AL161912.4-201ENST00000623889 2468 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HLA-DMBP28068 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HLA-DMBP28068 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HLA-DMBP28068 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HLA-DMBP28068 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 CCNT2P1-201ENST00000423082 1315 ntBASIC4.7□□□□□ -1.66
HLA-DMBP28068 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC4.7□□□□□ -1.66
HLA-DMBP28068 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 RN7SKP171-201ENST00000364417 303 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 RNU1-59P-201ENST00000364829 162 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 U3.23-201ENST00000391132 200 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 YWHAZP4-201ENST00000392459 708 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 PSMA6P1-201ENST00000400275 741 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 NPM1P37-201ENST00000403105 874 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 RN7SKP151-201ENST00000410230 316 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 DHFRP2-201ENST00000414224 547 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC015977.1-201ENST00000418887 292 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AL360013.1-201ENST00000419031 858 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC117434.1-201ENST00000419971 836 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AL354707.3-201ENST00000427308 331 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 BX679664.2-201ENST00000439282 283 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC097359.1-201ENST00000447946 463 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC117500.1-201ENST00000497352 755 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC026782.2-201ENST00000510845 636 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC024405.1-201ENST00000532521 1042 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 MIR3154-201ENST00000577829 84 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 RN7SL230P-201ENST00000580835 303 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC063977.7-201ENST00000594454 337 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 OSTC-205ENST00000613215 876 ntTSL 2 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 MIR7109-201ENST00000613748 65 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 U1.25-201ENST00000614085 162 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 uc_338.29-201ENST00000615099 168 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 U1.34-201ENST00000618578 162 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 U1.31-201ENST00000620022 160 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 AC024587.1-201ENST00000505925 2157 ntBASIC4.69□□□□□ -1.66
HLA-DMBP28068 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DMBP28068 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DMBP28068 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 DCN-218ENST00000551354 2924 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 RNA5SP232-201ENST00000364144 119 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 MIR621-201ENST00000384919 96 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC016027.5-201ENST00000427227 210 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms