Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL589765.6-201ENST00000601909 549 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 SMIM12P1-201ENST00000603004 274 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.54□□□□□ -1.52
LMX1BO60663 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.54□□□□□ -1.52
LMX1BO60663 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
LMX1BO60663 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 NR1H5P-201ENST00000452683 1377 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 GUCY1B2-204ENST00000531898 1979 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 AOX3P-204ENST00000491025 2107 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 ABCA11P-202ENST00000504019 2110 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
LMX1BO60663 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC5.53□□□□□ -1.52
LMX1BO60663 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 RNA5SP478-201ENST00000364657 115 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 OR6K3-202ENST00000368146 996 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 RN7SKP281-201ENST00000410472 352 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 RNA5SP251-201ENST00000410614 137 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 MTND4LP17-201ENST00000414607 293 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 HMGB1P32-201ENST00000425971 565 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.53□□□□□ -1.52
LMX1BO60663 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 RPS27AP3-201ENST00000453803 454 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC026688.1-201ENST00000520639 1168 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 AC005229.3-201ENST00000603438 323 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 BNIP3P35-201ENST00000604530 490 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 AL391597.1-201ENST00000618707 694 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.53□□□□□ -1.52
LMX1BO60663 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.53□□□□□ -1.52
LMX1BO60663 AL590396.2-201ENST00000636511 1041 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 AC008691.1-209ENST00000642094 814 ntBASIC5.53□□□□□ -1.52
LMX1BO60663 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.53□□□□□ -1.52
LMX1BO60663 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.53□□□□□ -1.52
LMX1BO60663 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
LMX1BO60663 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.53□□□□□ -1.52
LMX1BO60663 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
LMX1BO60663 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
LMX1BO60663 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
LMX1BO60663 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.52□□□□□ -1.53
LMX1BO60663 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
LMX1BO60663 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.52□□□□□ -1.53
LMX1BO60663 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
LMX1BO60663 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
LMX1BO60663 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
LMX1BO60663 RNA5SP77-201ENST00000365394 120 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.52□□□□□ -1.53
LMX1BO60663 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms