Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PPP1R11P1-201ENST00000486095 376 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 TRBV5-2-201ENST00000489095 273 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 AC117500.1-201ENST00000497352 755 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 KHDC1P1-201ENST00000511053 508 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SDCBPO00560 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.12□□□□□ -1.59
SDCBPO00560 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.12□□□□□ -1.59
SDCBPO00560 AL049779.3-201ENST00000557141 606 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 AC233699.1-201ENST00000569955 1168 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC5.12□□□□□ -1.59
SDCBPO00560 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.12□□□□□ -1.59
SDCBPO00560 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.12□□□□□ -1.59
SDCBPO00560 AC063977.7-201ENST00000594454 337 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.12□□□□□ -1.59
SDCBPO00560 AL360012.1-201ENST00000602813 131 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 AL122023.1-201ENST00000622847 530 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 AC007603.3-201ENST00000636915 979 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SDCBPO00560 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.12□□□□□ -1.59
SDCBPO00560 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SDCBPO00560 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SDCBPO00560 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.12□□□□□ -1.59
SDCBPO00560 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SDCBPO00560 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SDCBPO00560 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SDCBPO00560 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SDCBPO00560 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SDCBPO00560 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SDCBPO00560 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 AC025470.1-201ENST00000510053 2032 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SDCBPO00560 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 RNU1-49P-201ENST00000363468 159 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 RNA5SP346-201ENST00000363541 121 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 RNA5SP77-201ENST00000365394 120 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SDCBPO00560 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 RN7SKP144-201ENST00000411108 279 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 MTND2P12-201ENST00000417560 1252 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC073410.1-201ENST00000435125 589 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SDCBPO00560 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 OSTCP1-201ENST00000455507 450 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 ST13P12-201ENST00000508958 1094 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 AC138517.1-201ENST00000515724 568 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 Y_RNA.710-201ENST00000516975 110 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC244502.2-201ENST00000543361 851 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC022106.1-201ENST00000612834 766 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 RN7SL261P-201ENST00000613441 282 ntBASIC5.11□□□□□ -1.59
SDCBPO00560 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.11□□□□□ -1.59
SDCBPO00560 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SDCBPO00560 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDCBPO00560 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.11□□□□□ -1.59
SDCBPO00560 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SDCBPO00560 AC004076.2-201ENST00000620532 3323 ntBASIC5.1□□□□□ -1.59
SDCBPO00560 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SDCBPO00560 AL355834.1-201ENST00000556602 3965 ntBASIC5.1□□□□□ -1.59
SDCBPO00560 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SDCBPO00560 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SDCBPO00560 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms