Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 RNA5SP30-201ENST00000365552 115 ntBASIC5.71□□□□□ -1.49
VPS13AQ96RL7 DUTP5-201ENST00000406790 469 ntBASIC5.71□□□□□ -1.49
VPS13AQ96RL7 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.71□□□□□ -1.49
VPS13AQ96RL7 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.71□□□□□ -1.49
VPS13AQ96RL7 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 SVIL-203ENST00000375400 6729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC5.71□□□□□ -1.49
VPS13AQ96RL7 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 NEK1-206ENST00000510533 5377 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 SVOP-205ENST00000610966 6813 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 RN7SKP28-201ENST00000364770 305 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 GLULP6-201ENST00000399502 913 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AL133325.1-201ENST00000421090 382 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC008745.1-201ENST00000604064 271 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 EMP1-201ENST00000256951 5921 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC011455.2-201ENST00000599320 3336 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 SNORA16A-201ENST00000384342 137 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AL023284.3-201ENST00000407767 334 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 P2RY10P2-201ENST00000416730 913 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 CYP4F32P-201ENST00000426492 504 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC099677.3-201ENST00000427081 395 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC006335.2-201ENST00000437993 330 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 RPS18P6-201ENST00000476880 458 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC093824.1-201ENST00000508796 343 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 NRBF2P4-201ENST00000520874 850 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 AC012653.2-201ENST00000621880 420 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 TRPM3-203ENST00000358082 4710 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 TRPM3-214ENST00000396292 4740 ntAPPRIS P4 TSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 TRPM3-215ENST00000408909 4701 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
VPS13AQ96RL7 HSPA8P18-201ENST00000439846 1928 ntBASIC5.71□□□□□ -1.5
VPS13AQ96RL7 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 HDAC1P2-201ENST00000453661 1398 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC012618.3-205ENST00000637896 1496 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 RNA5SP319-201ENST00000362768 119 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AL133482.1-201ENST00000415988 498 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 NDUFA5P9-201ENST00000472609 340 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC068587.1-201ENST00000483613 781 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC015864.1-201ENST00000496512 544 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC013701.1-201ENST00000522657 465 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 CASC19-221ENST00000641309 1382 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 SMG1P5-202ENST00000529428 4219 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 SMG1P2-201ENST00000566127 4221 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC010132.2-201ENST00000295493 1043 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC093162.1-201ENST00000419682 124 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 RPS15AP30-201ENST00000420976 390 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC104837.2-201ENST00000427236 424 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC090114.3-201ENST00000479267 829 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 HSPE1P2-201ENST00000554777 306 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 HSPA8P14-201ENST00000552265 1805 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC020658.2-201ENST00000559030 4020 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 AC022819.1-201ENST00000563495 3910 ntBASIC5.7□□□□□ -1.5
VPS13AQ96RL7 MIR23A-201ENST00000385245 73 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 RPL32P33-201ENST00000487023 394 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms