Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
USP39Q53GS9 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
USP39Q53GS9 RNU6-650P-201ENST00000365658 111 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 MRPS21P5-201ENST00000417885 231 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 MTCO2P23-201ENST00000425216 680 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AC244033.1-201ENST00000426826 870 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AC069154.1-201ENST00000432914 542 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AC073143.1-201ENST00000436316 395 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 RN7SL39P-201ENST00000462264 297 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AC026254.2-201ENST00000475295 371 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 RN7SL705P-201ENST00000481678 294 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 RN7SL187P-201ENST00000495587 303 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 MTCYBP35-201ENST00000503630 1137 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 RNA5SP441-201ENST00000516809 88 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
USP39Q53GS9 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC6.76□□□□□ -1.33
USP39Q53GS9 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL078601.3-201ENST00000573303 535 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 MIR4502-201ENST00000580432 81 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.76□□□□□ -1.33
USP39Q53GS9 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AL671309.1-201ENST00000603750 544 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 OR4H6P-202ENST00000603819 340 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AC022387.2-201ENST00000604050 448 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AL022161.1-201ENST00000604390 213 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AL078595.3-201ENST00000623815 1166 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 AP000676.4-201ENST00000624659 623 ntBASIC6.76□□□□□ -1.33
USP39Q53GS9 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.76□□□□□ -1.33
USP39Q53GS9 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
USP39Q53GS9 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
USP39Q53GS9 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
USP39Q53GS9 RAD17P2-201ENST00000451754 1977 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AL669831.5-218ENST00000591702 1873 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 ZNF812P-201ENST00000457674 1694 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 PPIAP24-201ENST00000328558 471 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 RNU1-24P-201ENST00000364285 165 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 RPL9P21-201ENST00000392269 505 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.75□□□□□ -1.33
USP39Q53GS9 RN7SKP240-201ENST00000410583 375 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 KIF4CP-201ENST00000422742 1279 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.75□□□□□ -1.33
USP39Q53GS9 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC242426.1-201ENST00000435270 960 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 GAPDHP59-201ENST00000435908 267 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 MTCYBP31-201ENST00000438855 1122 ntBASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms