Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL353898.1-201ENST00000444055 238 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AL353803.3-201ENST00000444641 335 ntBASIC7.48□□□□□ -1.21
LIG3P49916 EEF1B2P5-201ENST00000444820 548 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC7.48□□□□□ -1.21
LIG3P49916 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC7.48□□□□□ -1.21
LIG3P49916 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 RPL7L1P3-201ENST00000455249 689 ntBASIC7.48□□□□□ -1.21
LIG3P49916 GTF2IP12-201ENST00000456547 356 ntBASIC7.48□□□□□ -1.21
LIG3P49916 RN7SL751P-201ENST00000473281 284 ntBASIC7.48□□□□□ -1.21
LIG3P49916 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC7.48□□□□□ -1.21
LIG3P49916 AC093890.1-201ENST00000502554 540 ntBASIC7.48□□□□□ -1.21
LIG3P49916 NPY6R-201ENST00000503807 1112 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 MTCYBP16-201ENST00000509187 1129 ntBASIC7.48□□□□□ -1.21
LIG3P49916 RNU6-1334P-201ENST00000516032 105 ntBASIC7.48□□□□□ -1.21
LIG3P49916 RN7SKP141-201ENST00000516167 338 ntBASIC7.48□□□□□ -1.21
LIG3P49916 MTCYBP20-201ENST00000524239 1129 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AC087257.2-201ENST00000538759 928 ntBASIC7.48□□□□□ -1.21
LIG3P49916 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC7.48□□□□□ -1.21
LIG3P49916 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC7.48□□□□□ -1.21
LIG3P49916 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 AC016877.3-201ENST00000606778 504 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AC007204.1-201ENST00000621794 555 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AC007490.1-201ENST00000624321 703 ntBASIC7.48□□□□□ -1.21
LIG3P49916 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 SNORA43.5-201ENST00000631270 138 ntBASIC7.48□□□□□ -1.21
LIG3P49916 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
LIG3P49916 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
LIG3P49916 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 SAMMSON-203ENST00000641005 2168 ntBASIC7.47□□□□□ -1.21
LIG3P49916 MTND4P10-201ENST00000446199 1363 ntBASIC7.47□□□□□ -1.21
LIG3P49916 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 MAPK10-344ENST00000641718 3746 ntBASIC7.47□□□□□ -1.21
LIG3P49916 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 AC090643.1-201ENST00000623600 3100 ntBASIC7.47□□□□□ -1.21
LIG3P49916 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
LIG3P49916 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 RNA5SP396-201ENST00000364834 120 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 SNORA68-201ENST00000384437 133 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC7.47□□□□□ -1.21
LIG3P49916 OR7E156P-201ENST00000400303 464 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC7.47□□□□□ -1.21
LIG3P49916 AC233289.1-201ENST00000403700 508 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AL355862.1-201ENST00000412705 353 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC020983.1-201ENST00000417063 543 ntBASIC7.47□□□□□ -1.21
LIG3P49916 RPSAP1-201ENST00000421328 880 ntBASIC7.47□□□□□ -1.21
LIG3P49916 RPL23AP85-201ENST00000421838 433 ntBASIC7.47□□□□□ -1.21
LIG3P49916 GRPEL2P2-201ENST00000421856 670 ntBASIC7.47□□□□□ -1.21
LIG3P49916 MTND4P20-201ENST00000424125 869 ntBASIC7.47□□□□□ -1.21
LIG3P49916 RPF2P1-201ENST00000424137 906 ntBASIC7.47□□□□□ -1.21
LIG3P49916 GTF2IP2-201ENST00000424290 697 ntBASIC7.47□□□□□ -1.21
LIG3P49916 RPS4XP16-201ENST00000427198 791 ntBASIC7.47□□□□□ -1.21
LIG3P49916 NIP7P1-201ENST00000433227 512 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC005040.1-201ENST00000437783 482 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC002066.1-202ENST00000439070 699 ntTSL 3 BASIC7.47□□□□□ -1.21
LIG3P49916 AC016772.1-201ENST00000444170 1261 ntBASIC7.47□□□□□ -1.21
LIG3P49916 RPL34P26-201ENST00000445636 354 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC7.47□□□□□ -1.21
LIG3P49916 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 MRPL49P1-201ENST00000505951 535 ntBASIC7.47□□□□□ -1.21
LIG3P49916 PABPC1P1-201ENST00000506347 591 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC7.47□□□□□ -1.21
LIG3P49916 AC111000.2-201ENST00000507775 550 ntBASIC7.47□□□□□ -1.21
LIG3P49916 OSTC-204ENST00000512478 663 ntTSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 AC138938.1-201ENST00000515431 782 ntBASIC7.47□□□□□ -1.21
LIG3P49916 SAA3P-201ENST00000533267 365 ntBASIC7.47□□□□□ -1.21
LIG3P49916 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 AC068631.3-201ENST00000538831 225 ntBASIC7.47□□□□□ -1.21
LIG3P49916 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC7.47□□□□□ -1.21
LIG3P49916 AC024909.2-201ENST00000553035 286 ntBASIC7.47□□□□□ -1.21
LIG3P49916 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC7.47□□□□□ -1.21
LIG3P49916 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 IGHV1OR15-3-201ENST00000564926 351 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 EIF1-207ENST00000591776 797 ntTSL 4 BASIC7.47□□□□□ -1.21
LIG3P49916 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms