Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
HOXC9P31274 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC7.98□□□□□ -1.13
HOXC9P31274 OR13K1P-201ENST00000444577 975 ntBASIC7.98□□□□□ -1.13
HOXC9P31274 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC7.98□□□□□ -1.13
HOXC9P31274 AC112187.1-201ENST00000455837 479 ntBASIC7.98□□□□□ -1.13
HOXC9P31274 AC104164.1-201ENST00000460282 590 ntBASIC7.98□□□□□ -1.13
HOXC9P31274 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC7.98□□□□□ -1.13
HOXC9P31274 AC091078.2-201ENST00000557145 559 ntBASIC7.98□□□□□ -1.13
HOXC9P31274 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.98□□□□□ -1.13
HOXC9P31274 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC7.98□□□□□ -1.13
HOXC9P31274 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
HOXC9P31274 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.98□□□□□ -1.13
HOXC9P31274 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
HOXC9P31274 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 PARP4P2-201ENST00000446672 3326 ntBASIC7.98□□□□□ -1.13
HOXC9P31274 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.98□□□□□ -1.13
HOXC9P31274 AOX3P-204ENST00000491025 2107 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC7.97□□□□□ -1.13
HOXC9P31274 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.97□□□□□ -1.13
HOXC9P31274 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
HOXC9P31274 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 RNA5SP132-201ENST00000364725 118 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC7.97□□□□□ -1.13
HOXC9P31274 MIR1178-201ENST00000408396 91 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 RN7SKP278-201ENST00000410504 342 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.97□□□□□ -1.13
HOXC9P31274 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.97□□□□□ -1.13
HOXC9P31274 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC7.97□□□□□ -1.13
HOXC9P31274 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC7.97□□□□□ -1.13
HOXC9P31274 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.97□□□□□ -1.13
HOXC9P31274 AC073909.1-201ENST00000447112 999 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.97□□□□□ -1.13
HOXC9P31274 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.97□□□□□ -1.13
HOXC9P31274 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC7.97□□□□□ -1.13
HOXC9P31274 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.97□□□□□ -1.13
HOXC9P31274 AP005639.1-201ENST00000526939 192 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.97□□□□□ -1.13
HOXC9P31274 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 AL049840.6-201ENST00000604583 345 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 RN7SL544P-201ENST00000617232 284 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 TCL6_3.1-201ENST00000619064 137 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 RN7SL763P-201ENST00000620922 284 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC7.97□□□□□ -1.13
HOXC9P31274 AC099654.11-201ENST00000638857 294 ntBASIC7.97□□□□□ -1.13
HOXC9P31274 ATM-229ENST00000639953 587 ntTSL 5 BASIC7.97□□□□□ -1.13
HOXC9P31274 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC7.97□□□□□ -1.13
HOXC9P31274 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HOXC9P31274 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
HOXC9P31274 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.13
HOXC9P31274 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.13
HOXC9P31274 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.96□□□□□ -1.13
HOXC9P31274 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HOXC9P31274 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.96□□□□□ -1.13
HOXC9P31274 AL591848.4-201ENST00000567832 3472 ntBASIC7.96□□□□□ -1.13
HOXC9P31274 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 RNA5SP46-201ENST00000362370 120 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 OR3A2-201ENST00000408891 1076 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 BMS1P17-202ENST00000416720 316 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 AL662874.1-201ENST00000426065 230 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 AL451136.1-201ENST00000435399 325 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 SDC4P-201ENST00000453285 601 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC7.96□□□□□ -1.14
HOXC9P31274 AC138866.2-201ENST00000508650 584 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 AC073581.1-201ENST00000519036 575 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.96□□□□□ -1.14
HOXC9P31274 DPPA2P4-201ENST00000563717 878 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC7.96□□□□□ -1.14
HOXC9P31274 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.96□□□□□ -1.14
HOXC9P31274 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 AC119501.1-201ENST00000603646 475 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 AC022919.1-201ENST00000624979 626 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.96□□□□□ -1.14
HOXC9P31274 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.96□□□□□ -1.14
HOXC9P31274 AP002833.3-201ENST00000625075 2265 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
HOXC9P31274 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.14
HOXC9P31274 AC092725.2-201ENST00000567658 1389 ntBASIC7.96□□□□□ -1.14
HOXC9P31274 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC7.95□□□□□ -1.14
HOXC9P31274 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 AL391261.1-201ENST00000555712 1479 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC7.95□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms