Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF38Q9H0F5 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
RNF38Q9H0F5 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.52■□□□□ 0.87
RNF38Q9H0F5 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
RNF38Q9H0F5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 AL512408.1-201ENST00000569378 2000 ntBASIC20.51■□□□□ 0.87
RNF38Q9H0F5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 AP005212.1-201ENST00000581547 1997 ntBASIC20.51■□□□□ 0.87
RNF38Q9H0F5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF38Q9H0F5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 NIFKP9-201ENST00000419265 221 ntBASIC20.5■□□□□ 0.87
RNF38Q9H0F5 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 CR392000.1-201ENST00000624770 1228 ntBASIC20.5■□□□□ 0.87
RNF38Q9H0F5 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 FEM1AP1-201ENST00000431297 1995 ntBASIC20.5■□□□□ 0.87
RNF38Q9H0F5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF38Q9H0F5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.49■□□□□ 0.87
RNF38Q9H0F5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 YBX1P10-201ENST00000444752 975 ntBASIC20.49■□□□□ 0.87
RNF38Q9H0F5 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF38Q9H0F5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 AC087499.1-201ENST00000418141 1075 ntBASIC20.48■□□□□ 0.87
RNF38Q9H0F5 KSR1P1-201ENST00000446298 240 ntBASIC20.48■□□□□ 0.87
RNF38Q9H0F5 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 KRT18P16-201ENST00000510337 1294 ntBASIC20.48■□□□□ 0.87
RNF38Q9H0F5 NUDT16P1-203ENST00000513809 620 ntBASIC20.48■□□□□ 0.87
RNF38Q9H0F5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF38Q9H0F5 AL391422.3-201ENST00000603791 2761 ntBASIC20.47■□□□□ 0.87
RNF38Q9H0F5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 C1QL1P1-201ENST00000568105 661 ntBASIC20.47■□□□□ 0.87
RNF38Q9H0F5 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 REXO1L10P-201ENST00000615707 1290 ntBASIC20.47■□□□□ 0.87
RNF38Q9H0F5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF38Q9H0F5 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms