Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.42■■□□□ 1.02
VPS52Q8N1B4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.42■■□□□ 1.02
VPS52Q8N1B4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS52Q8N1B4 AL121906.2-201ENST00000621597 723 ntBASIC21.42■■□□□ 1.02
VPS52Q8N1B4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.42■■□□□ 1.02
VPS52Q8N1B4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS52Q8N1B4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 FAM197Y1-201ENST00000421178 764 ntBASIC21.41■■□□□ 1.02
VPS52Q8N1B4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 AL353708.3-201ENST00000610272 989 ntBASIC21.41■■□□□ 1.02
VPS52Q8N1B4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 AC092667.1-201ENST00000434301 2586 ntBASIC21.41■■□□□ 1.02
VPS52Q8N1B4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS52Q8N1B4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS52Q8N1B4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
VPS52Q8N1B4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
VPS52Q8N1B4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VPS52Q8N1B4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
VPS52Q8N1B4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
VPS52Q8N1B4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 AC121338.2-201ENST00000622535 1744 ntBASIC21.39■■□□□ 1.01
VPS52Q8N1B4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS52Q8N1B4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 RCN1P1-201ENST00000400413 996 ntBASIC21.38■■□□□ 1.01
VPS52Q8N1B4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS52Q8N1B4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 MMP23A-201ENST00000234610 1017 ntBASIC21.37■■□□□ 1.01
VPS52Q8N1B4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 AC073195.1-201ENST00000607241 877 ntBASIC21.37■■□□□ 1.01
VPS52Q8N1B4 AC004264.1-201ENST00000608354 794 ntBASIC21.37■■□□□ 1.01
VPS52Q8N1B4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS52Q8N1B4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms