Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NHLRC1Q6VVB1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NHLRC1Q6VVB1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 HLA-L-209ENST00000420110 1011 ntBASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 HLA-B-256ENST00000639848 1089 ntBASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 AC133041.1-202ENST00000642053 222 ntBASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NHLRC1Q6VVB1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 ID1-201ENST00000376105 1233 ntBASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
NHLRC1Q6VVB1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.71■□□□□ 0.43
NHLRC1Q6VVB1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
NHLRC1Q6VVB1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
NHLRC1Q6VVB1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NHLRC1Q6VVB1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms