Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC091076.1-201ENST00000610741 619 ntBASIC21.25■□□□□ 0.99
COL4A4P53420 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.25■□□□□ 0.99
COL4A4P53420 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.25■□□□□ 0.99
COL4A4P53420 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A4P53420 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 AL031133.1-201ENST00000406807 723 ntBASIC21.24■□□□□ 0.99
COL4A4P53420 AC009947.2-201ENST00000444014 672 ntBASIC21.24■□□□□ 0.99
COL4A4P53420 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 AC128688.1-201ENST00000487626 519 ntBASIC21.24■□□□□ 0.99
COL4A4P53420 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A4P53420 AP000550.4-202ENST00000639755 178 ntBASIC21.24■□□□□ 0.99
COL4A4P53420 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
COL4A4P53420 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.24■□□□□ 0.99
COL4A4P53420 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.24■□□□□ 0.99
COL4A4P53420 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A4P53420 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 INGX-201ENST00000359239 846 ntBASIC21.24■□□□□ 0.99
COL4A4P53420 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.24■□□□□ 0.99
COL4A4P53420 TPM4P1-201ENST00000436100 807 ntBASIC21.24■□□□□ 0.99
COL4A4P53420 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A4P53420 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.24■□□□□ 0.99
COL4A4P53420 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
COL4A4P53420 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A4P53420 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A4P53420 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
COL4A4P53420 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A4P53420 AC007225.1-201ENST00000566331 1836 ntBASIC21.23■□□□□ 0.99
COL4A4P53420 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.23■□□□□ 0.99
COL4A4P53420 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL4A4P53420 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.23■□□□□ 0.99
COL4A4P53420 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.23■□□□□ 0.99
COL4A4P53420 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL4A4P53420 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
COL4A4P53420 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.23■□□□□ 0.99
COL4A4P53420 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL4A4P53420 FSCN1P1-201ENST00000568912 1481 ntBASIC21.23■□□□□ 0.99
COL4A4P53420 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
COL4A4P53420 AL137060.1-201ENST00000618151 2648 ntBASIC21.23■□□□□ 0.99
COL4A4P53420 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A4P53420 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
COL4A4P53420 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 YBX1P2-201ENST00000489612 999 ntBASIC21.22■□□□□ 0.99
COL4A4P53420 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.22■□□□□ 0.99
COL4A4P53420 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.22■□□□□ 0.99
COL4A4P53420 FAM87A-204ENST00000613235 858 ntBASIC21.22■□□□□ 0.99
COL4A4P53420 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.22■□□□□ 0.99
COL4A4P53420 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A4P53420 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.22■□□□□ 0.99
COL4A4P53420 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A4P53420 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A4P53420 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A4P53420 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A4P53420 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A4P53420 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A4P53420 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A4P53420 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A4P53420 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A4P53420 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL4A4P53420 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.21■□□□□ 0.99
COL4A4P53420 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
COL4A4P53420 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.21■□□□□ 0.99
COL4A4P53420 AC093458.2-201ENST00000623150 629 ntBASIC21.21■□□□□ 0.99
COL4A4P53420 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A4P53420 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A4P53420 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A4P53420 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A4P53420 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
COL4A4P53420 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A4P53420 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.2■□□□□ 0.98
COL4A4P53420 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A4P53420 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.2■□□□□ 0.98
COL4A4P53420 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A4P53420 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A4P53420 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.2■□□□□ 0.98
COL4A4P53420 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms