Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC27.51■■□□□ 1.99
MSH6P52701 PTPA-216ENST00000432651 857 ntTSL 2 BASIC27.51■■□□□ 1.99
MSH6P52701 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
MSH6P52701 TSPY17P-201ENST00000450329 467 ntBASIC27.51■■□□□ 1.99
MSH6P52701 PRSS44-201ENST00000515154 1146 ntBASIC27.51■■□□□ 1.99
MSH6P52701 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC27.51■■□□□ 1.99
MSH6P52701 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
MSH6P52701 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■□□□ 1.99
MSH6P52701 GOLGA2P6-201ENST00000340929 2049 ntBASIC27.51■■□□□ 1.99
MSH6P52701 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
MSH6P52701 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC27.5■■□□□ 1.99
MSH6P52701 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC27.5■■□□□ 1.99
MSH6P52701 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC27.5■■□□□ 1.99
MSH6P52701 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC27.5■■□□□ 1.99
MSH6P52701 TSPY21P-201ENST00000433481 731 ntBASIC27.5■■□□□ 1.99
MSH6P52701 AP000347.1-202ENST00000435868 847 ntBASIC27.5■■□□□ 1.99
MSH6P52701 TSPY23P-201ENST00000440136 739 ntBASIC27.5■■□□□ 1.99
MSH6P52701 FDX1P1-201ENST00000449115 551 ntBASIC27.5■■□□□ 1.99
MSH6P52701 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC27.5■■□□□ 1.99
MSH6P52701 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH6P52701 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH6P52701 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH6P52701 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH6P52701 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC27.5■■□□□ 1.99
MSH6P52701 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
MSH6P52701 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH6P52701 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC27.49■■□□□ 1.99
MSH6P52701 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC27.49■■□□□ 1.99
MSH6P52701 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC27.49■■□□□ 1.99
MSH6P52701 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC27.49■■□□□ 1.99
MSH6P52701 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC27.49■■□□□ 1.99
MSH6P52701 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC27.49■■□□□ 1.99
MSH6P52701 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 AC083849.1-201ENST00000615227 514 ntBASIC27.49■■□□□ 1.99
MSH6P52701 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
MSH6P52701 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
MSH6P52701 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC27.49■■□□□ 1.99
MSH6P52701 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC27.48■■□□□ 1.99
MSH6P52701 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC27.48■■□□□ 1.99
MSH6P52701 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC27.48■■□□□ 1.99
MSH6P52701 ETFA-216ENST00000560726 942 ntTSL 3 BASIC27.48■■□□□ 1.99
MSH6P52701 AC140113.3-201ENST00000605663 199 ntBASIC27.48■■□□□ 1.99
MSH6P52701 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC27.48■■□□□ 1.99
MSH6P52701 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC27.48■■□□□ 1.99
MSH6P52701 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH6P52701 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC27.48■■□□□ 1.99
MSH6P52701 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC27.48■■□□□ 1.99
MSH6P52701 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC27.47■■□□□ 1.99
MSH6P52701 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 GUSBP5-202ENST00000510805 1989 ntBASIC27.47■■□□□ 1.99
MSH6P52701 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC27.47■■□□□ 1.99
MSH6P52701 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC27.47■■□□□ 1.99
MSH6P52701 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 FXN-203ENST00000396366 922 ntTSL 2 BASIC27.47■■□□□ 1.99
MSH6P52701 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH6P52701 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC27.47■■□□□ 1.99
MSH6P52701 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC27.47■■□□□ 1.99
MSH6P52701 AL353719.1-201ENST00000566847 864 ntBASIC27.47■■□□□ 1.99
MSH6P52701 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC27.47■■□□□ 1.99
MSH6P52701 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH6P52701 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH6P52701 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
MSH6P52701 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
MSH6P52701 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
MSH6P52701 AC116351.2-201ENST00000606540 1585 ntBASIC27.46■■□□□ 1.99
MSH6P52701 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC27.46■■□□□ 1.99
MSH6P52701 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
MSH6P52701 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
MSH6P52701 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
MSH6P52701 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC27.46■■□□□ 1.99
MSH6P52701 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC27.46■■□□□ 1.99
MSH6P52701 RN7SL510P-201ENST00000581311 263 ntBASIC27.46■■□□□ 1.99
MSH6P52701 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC27.46■■□□□ 1.99
MSH6P52701 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC27.46■■□□□ 1.99
MSH6P52701 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC27.46■■□□□ 1.99
MSH6P52701 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC27.46■■□□□ 1.99
MSH6P52701 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC27.46■■□□□ 1.99
MSH6P52701 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.99
MSH6P52701 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms