Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
HNF4AP41235 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.14■□□□□ 0.65
HNF4AP41235 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
HNF4AP41235 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HNF4AP41235 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HNF4AP41235 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HNF4AP41235 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
HNF4AP41235 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.14■□□□□ 0.65
HNF4AP41235 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.13■□□□□ 0.65
HNF4AP41235 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.13■□□□□ 0.65
HNF4AP41235 AC125437.2-201ENST00000625180 2167 ntBASIC19.13■□□□□ 0.65
HNF4AP41235 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
HNF4AP41235 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HNF4AP41235 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HNF4AP41235 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.13■□□□□ 0.65
HNF4AP41235 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.13■□□□□ 0.65
HNF4AP41235 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.13■□□□□ 0.65
HNF4AP41235 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
HNF4AP41235 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HNF4AP41235 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HNF4AP41235 PHGDH-210ENST00000641115 1638 ntBASIC19.13■□□□□ 0.65
HNF4AP41235 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HNF4AP41235 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.13■□□□□ 0.65
HNF4AP41235 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HNF4AP41235 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.13■□□□□ 0.65
HNF4AP41235 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.12■□□□□ 0.65
HNF4AP41235 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.12■□□□□ 0.65
HNF4AP41235 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
HNF4AP41235 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.12■□□□□ 0.65
HNF4AP41235 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.12■□□□□ 0.65
HNF4AP41235 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.12■□□□□ 0.65
HNF4AP41235 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.12■□□□□ 0.65
HNF4AP41235 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HNF4AP41235 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
HNF4AP41235 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.12■□□□□ 0.65
HNF4AP41235 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HNF4AP41235 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.11■□□□□ 0.65
HNF4AP41235 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HNF4AP41235 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.11■□□□□ 0.65
HNF4AP41235 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HNF4AP41235 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.11■□□□□ 0.65
HNF4AP41235 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.11■□□□□ 0.65
HNF4AP41235 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 AL390719.1-204ENST00000412397 1219 ntBASIC19.11■□□□□ 0.65
HNF4AP41235 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.11■□□□□ 0.65
HNF4AP41235 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.11■□□□□ 0.65
HNF4AP41235 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.11■□□□□ 0.65
HNF4AP41235 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.11■□□□□ 0.65
HNF4AP41235 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.11■□□□□ 0.65
HNF4AP41235 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HNF4AP41235 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.11■□□□□ 0.65
HNF4AP41235 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.11■□□□□ 0.65
HNF4AP41235 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HNF4AP41235 AC092368.3-202ENST00000574180 1591 ntBASIC19.1■□□□□ 0.65
HNF4AP41235 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.1■□□□□ 0.65
HNF4AP41235 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.1■□□□□ 0.65
HNF4AP41235 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HNF4AP41235 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.1■□□□□ 0.65
HNF4AP41235 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.1■□□□□ 0.65
HNF4AP41235 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.1■□□□□ 0.65
HNF4AP41235 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.1■□□□□ 0.65
HNF4AP41235 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.1■□□□□ 0.65
HNF4AP41235 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.1■□□□□ 0.65
HNF4AP41235 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.1■□□□□ 0.65
HNF4AP41235 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms