Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CXCL1P09341 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.3■□□□□ 0.04
CXCL1P09341 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.3■□□□□ 0.04
CXCL1P09341 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.3■□□□□ 0.04
CXCL1P09341 AC011298.3-201ENST00000615796 283 ntBASIC15.3■□□□□ 0.04
CXCL1P09341 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.3■□□□□ 0.04
CXCL1P09341 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL1P09341 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.29■□□□□ 0.04
CXCL1P09341 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.29■□□□□ 0.04
CXCL1P09341 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL1P09341 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL1P09341 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.29■□□□□ 0.04
CXCL1P09341 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL1P09341 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CXCL1P09341 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
CXCL1P09341 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL1P09341 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL1P09341 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.28■□□□□ 0.04
CXCL1P09341 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CXCL1P09341 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 AC011484.1-201ENST00000377652 1995 ntBASIC15.28■□□□□ 0.04
CXCL1P09341 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CXCL1P09341 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL1P09341 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.28■□□□□ 0.04
CXCL1P09341 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
CXCL1P09341 SF1-220ENST00000626028 704 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL1P09341 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC15.28■□□□□ 0.04
CXCL1P09341 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL1P09341 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 AC124067.4-201ENST00000519691 2379 ntBASIC15.28■□□□□ 0.04
CXCL1P09341 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CXCL1P09341 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL1P09341 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL1P09341 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.27■□□□□ 0.04
CXCL1P09341 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CXCL1P09341 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CXCL1P09341 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CXCL1P09341 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CXCL1P09341 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CXCL1P09341 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL1P09341 SLC47A1P1-202ENST00000449666 945 ntBASIC15.27■□□□□ 0.04
CXCL1P09341 RARRES2P1-201ENST00000474487 481 ntBASIC15.27■□□□□ 0.04
CXCL1P09341 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC15.27■□□□□ 0.04
CXCL1P09341 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CXCL1P09341 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL1P09341 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL1P09341 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL1P09341 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.27■□□□□ 0.03
CXCL1P09341 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL1P09341 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL1P09341 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL1P09341 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CXCL1P09341 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL1P09341 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL1P09341 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CXCL1P09341 AC009237.3-201ENST00000393279 1427 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms