Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 UPK3BP1-201ENST00000428678 509 ntBASIC20.05■□□□□ 0.8
COL4A2P08572 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.05■□□□□ 0.8
COL4A2P08572 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL4A2P08572 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.05■□□□□ 0.8
COL4A2P08572 SLC25A1P4-201ENST00000567977 778 ntBASIC20.05■□□□□ 0.8
COL4A2P08572 AP000692.2-201ENST00000608391 879 ntBASIC20.05■□□□□ 0.8
COL4A2P08572 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.04■□□□□ 0.8
COL4A2P08572 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL4A2P08572 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.04■□□□□ 0.8
COL4A2P08572 AC006128.1-201ENST00000624704 1661 ntBASIC20.04■□□□□ 0.8
COL4A2P08572 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A2P08572 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 AC004951.3-201ENST00000418645 1148 ntBASIC20.04■□□□□ 0.8
COL4A2P08572 FAM207BP-201ENST00000447172 505 ntBASIC20.04■□□□□ 0.8
COL4A2P08572 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 AC091390.4-202ENST00000476426 537 ntBASIC20.04■□□□□ 0.8
COL4A2P08572 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.04■□□□□ 0.8
COL4A2P08572 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A2P08572 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
COL4A2P08572 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A2P08572 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A2P08572 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A2P08572 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A2P08572 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
COL4A2P08572 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A2P08572 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A2P08572 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A2P08572 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
COL4A2P08572 FP700111.2-201ENST00000619190 1892 ntBASIC20.03■□□□□ 0.8
COL4A2P08572 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL4A2P08572 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A2P08572 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A2P08572 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A2P08572 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.02■□□□□ 0.8
COL4A2P08572 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.02■□□□□ 0.8
COL4A2P08572 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.02■□□□□ 0.8
COL4A2P08572 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL4A2P08572 AC083849.1-201ENST00000615227 514 ntBASIC20.02■□□□□ 0.8
COL4A2P08572 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.02■□□□□ 0.8
COL4A2P08572 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A2P08572 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
COL4A2P08572 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A2P08572 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A2P08572 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A2P08572 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A2P08572 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A2P08572 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.02■□□□□ 0.79
COL4A2P08572 LINC01238-205ENST00000567549 1107 ntBASIC20.02■□□□□ 0.79
COL4A2P08572 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
COL4A2P08572 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL4A2P08572 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A2P08572 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A2P08572 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A2P08572 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL4A2P08572 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A2P08572 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A2P08572 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A2P08572 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A2P08572 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A2P08572 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A2P08572 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20■□□□□ 0.79
COL4A2P08572 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20■□□□□ 0.79
COL4A2P08572 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A2P08572 GXYLT1P6-201ENST00000456472 1187 ntBASIC20■□□□□ 0.79
COL4A2P08572 AL359075.1-203ENST00000462729 1002 ntBASIC20■□□□□ 0.79
COL4A2P08572 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20■□□□□ 0.79
COL4A2P08572 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20■□□□□ 0.79
COL4A2P08572 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20■□□□□ 0.79
COL4A2P08572 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
COL4A2P08572 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20■□□□□ 0.79
COL4A2P08572 AC010653.2-201ENST00000623505 997 ntBASIC20■□□□□ 0.79
COL4A2P08572 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL4A2P08572 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20■□□□□ 0.79
COL4A2P08572 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A2P08572 AF106564.1-201ENST00000607058 2553 ntBASIC20■□□□□ 0.79
COL4A2P08572 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20■□□□□ 0.79
COL4A2P08572 TMEM179-206ENST00000616017 1645 ntBASIC20■□□□□ 0.79
COL4A2P08572 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A2P08572 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A2P08572 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A2P08572 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A2P08572 AC008040.2-201ENST00000461049 708 ntBASIC19.99■□□□□ 0.79
COL4A2P08572 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms