Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TOP3BO95985 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
TOP3BO95985 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.21■□□□□ 0.83
TOP3BO95985 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
TOP3BO95985 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TOP3BO95985 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TOP3BO95985 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.21■□□□□ 0.83
TOP3BO95985 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 PNMA6B-201ENST00000538162 1200 ntBASIC20.21■□□□□ 0.83
TOP3BO95985 AC120498.10-201ENST00000621827 505 ntBASIC20.21■□□□□ 0.83
TOP3BO95985 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TOP3BO95985 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.21■□□□□ 0.83
TOP3BO95985 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TOP3BO95985 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TOP3BO95985 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.2■□□□□ 0.82
TOP3BO95985 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.2■□□□□ 0.82
TOP3BO95985 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.2■□□□□ 0.82
TOP3BO95985 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.2■□□□□ 0.82
TOP3BO95985 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.2■□□□□ 0.82
TOP3BO95985 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.2■□□□□ 0.82
TOP3BO95985 AC116050.2-201ENST00000612102 1779 ntBASIC20.2■□□□□ 0.82
TOP3BO95985 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.2■□□□□ 0.82
TOP3BO95985 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.2■□□□□ 0.82
TOP3BO95985 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TOP3BO95985 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.2■□□□□ 0.82
TOP3BO95985 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.2■□□□□ 0.82
TOP3BO95985 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TOP3BO95985 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TOP3BO95985 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.19■□□□□ 0.82
TOP3BO95985 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.19■□□□□ 0.82
TOP3BO95985 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.19■□□□□ 0.82
TOP3BO95985 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.19■□□□□ 0.82
TOP3BO95985 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.19■□□□□ 0.82
TOP3BO95985 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.19■□□□□ 0.82
TOP3BO95985 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 AC069544.1-201ENST00000609399 999 ntBASIC20.19■□□□□ 0.82
TOP3BO95985 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.19■□□□□ 0.82
TOP3BO95985 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.19■□□□□ 0.82
TOP3BO95985 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TOP3BO95985 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.19■□□□□ 0.82
TOP3BO95985 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.18■□□□□ 0.82
TOP3BO95985 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TOP3BO95985 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
TOP3BO95985 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TOP3BO95985 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.18■□□□□ 0.82
TOP3BO95985 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms