Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
PCF11O94913 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC30.96■■■□□ 2.55
PCF11O94913 SLC25A3P1-201ENST00000443844 931 ntBASIC30.96■■■□□ 2.55
PCF11O94913 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC30.96■■■□□ 2.55
PCF11O94913 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
PCF11O94913 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC30.95■■■□□ 2.55
PCF11O94913 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.55
PCF11O94913 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
PCF11O94913 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.55
PCF11O94913 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC30.95■■■□□ 2.55
PCF11O94913 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
PCF11O94913 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
PCF11O94913 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.54
PCF11O94913 TUBB8P6-201ENST00000436895 1288 ntBASIC30.95■■■□□ 2.54
PCF11O94913 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC30.95■■■□□ 2.54
PCF11O94913 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC30.95■■■□□ 2.54
PCF11O94913 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC30.95■■■□□ 2.54
PCF11O94913 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
PCF11O94913 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC30.95■■■□□ 2.54
PCF11O94913 AP005242.2-201ENST00000580065 1175 ntBASIC30.95■■■□□ 2.54
PCF11O94913 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC30.95■■■□□ 2.54
PCF11O94913 RCC2P6-201ENST00000526625 1557 ntBASIC30.94■■■□□ 2.54
PCF11O94913 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
PCF11O94913 AC011506.1-201ENST00000474329 610 ntBASIC30.94■■■□□ 2.54
PCF11O94913 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC30.94■■■□□ 2.54
PCF11O94913 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 TMEM179-206ENST00000616017 1645 ntBASIC30.94■■■□□ 2.54
PCF11O94913 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC30.94■■■□□ 2.54
PCF11O94913 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC30.94■■■□□ 2.54
PCF11O94913 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
PCF11O94913 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
PCF11O94913 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
PCF11O94913 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC30.93■■■□□ 2.54
PCF11O94913 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC30.93■■■□□ 2.54
PCF11O94913 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 AC007375.3-201ENST00000600936 2314 ntBASIC30.93■■■□□ 2.54
PCF11O94913 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PCF11O94913 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC30.92■■■□□ 2.54
PCF11O94913 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC30.92■■■□□ 2.54
PCF11O94913 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 AC073314.1-201ENST00000568729 2216 ntBASIC30.92■■■□□ 2.54
PCF11O94913 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC30.92■■■□□ 2.54
PCF11O94913 NAPSB-206ENST00000562112 1266 ntBASIC30.92■■■□□ 2.54
PCF11O94913 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC30.92■■■□□ 2.54
PCF11O94913 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC30.92■■■□□ 2.54
PCF11O94913 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCF11O94913 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
PCF11O94913 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
PCF11O94913 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
PCF11O94913 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
PCF11O94913 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
PCF11O94913 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
PCF11O94913 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC30.91■■■□□ 2.54
PCF11O94913 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC30.91■■■□□ 2.54
PCF11O94913 LINC01568-207ENST00000641790 1380 ntBASIC30.9■■■□□ 2.54
PCF11O94913 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PCF11O94913 AP005212.1-201ENST00000581547 1997 ntBASIC30.9■■■□□ 2.54
PCF11O94913 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PCF11O94913 AC005521.1-201ENST00000393351 872 ntBASIC30.9■■■□□ 2.54
PCF11O94913 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
PCF11O94913 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PCF11O94913 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
PCF11O94913 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC30.89■■■□□ 2.54
PCF11O94913 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC30.89■■■□□ 2.54
PCF11O94913 Z85996.1-201ENST00000494644 937 ntBASIC30.89■■■□□ 2.54
PCF11O94913 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC30.89■■■□□ 2.54
PCF11O94913 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCF11O94913 FSCN1P1-201ENST00000568912 1481 ntBASIC30.89■■■□□ 2.54
PCF11O94913 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
PCF11O94913 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
PCF11O94913 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
PCF11O94913 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms