Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 AC097488.1-201ENST00000507834 756 ntBASIC25.44■■□□□ 1.66
PTCD1O75127 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC25.44■■□□□ 1.66
PTCD1O75127 C2orf69P3-201ENST00000565542 1120 ntBASIC25.44■■□□□ 1.66
PTCD1O75127 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 BID-203ENST00000399765 1879 ntTSL 2 BASIC25.44■■□□□ 1.66
PTCD1O75127 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC25.44■■□□□ 1.66
PTCD1O75127 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.43■■□□□ 1.66
PTCD1O75127 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCD1O75127 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PTCD1O75127 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.43■■□□□ 1.66
PTCD1O75127 GOLGA6L3-201ENST00000507199 1679 ntBASIC25.43■■□□□ 1.66
PTCD1O75127 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC25.43■■□□□ 1.66
PTCD1O75127 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCD1O75127 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCD1O75127 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC25.43■■□□□ 1.66
PTCD1O75127 TUBB8P6-201ENST00000436895 1288 ntBASIC25.43■■□□□ 1.66
PTCD1O75127 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.43■■□□□ 1.66
PTCD1O75127 WWOX-216ENST00000569818 525 ntBASIC25.43■■□□□ 1.66
PTCD1O75127 AP005242.2-201ENST00000580065 1175 ntBASIC25.43■■□□□ 1.66
PTCD1O75127 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCD1O75127 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
PTCD1O75127 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PTCD1O75127 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC25.42■■□□□ 1.66
PTCD1O75127 AC079834.2-201ENST00000609776 1949 ntBASIC25.42■■□□□ 1.66
PTCD1O75127 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCD1O75127 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC25.42■■□□□ 1.66
PTCD1O75127 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC25.42■■□□□ 1.66
PTCD1O75127 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC25.42■■□□□ 1.66
PTCD1O75127 AC006011.2-201ENST00000621313 1158 ntBASIC25.42■■□□□ 1.66
PTCD1O75127 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC25.42■■□□□ 1.66
PTCD1O75127 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCD1O75127 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCD1O75127 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCD1O75127 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC25.41■■□□□ 1.66
PTCD1O75127 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.41■■□□□ 1.66
PTCD1O75127 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 LIN28AP1-201ENST00000429574 405 ntBASIC25.41■■□□□ 1.66
PTCD1O75127 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC25.41■■□□□ 1.66
PTCD1O75127 EGLN1P1-201ENST00000531623 762 ntBASIC25.41■■□□□ 1.66
PTCD1O75127 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.41■■□□□ 1.66
PTCD1O75127 AC131212.4-201ENST00000623606 975 ntBASIC25.41■■□□□ 1.66
PTCD1O75127 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC25.41■■□□□ 1.66
PTCD1O75127 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PTCD1O75127 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC25.41■■□□□ 1.66
PTCD1O75127 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
PTCD1O75127 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PTCD1O75127 TSPY14P-201ENST00000303979 915 ntBASIC25.4■■□□□ 1.66
PTCD1O75127 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTCD1O75127 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTCD1O75127 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTCD1O75127 ATP5G1P1-201ENST00000448724 379 ntBASIC25.4■■□□□ 1.66
PTCD1O75127 DGCR10-201ENST00000609839 495 ntBASIC25.4■■□□□ 1.66
PTCD1O75127 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
PTCD1O75127 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTCD1O75127 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
PTCD1O75127 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC25.4■■□□□ 1.66
PTCD1O75127 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.39■■□□□ 1.66
PTCD1O75127 AC092720.2-201ENST00000602388 1665 ntBASIC25.39■■□□□ 1.66
PTCD1O75127 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
PTCD1O75127 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
PTCD1O75127 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PTCD1O75127 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PTCD1O75127 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
PTCD1O75127 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
PTCD1O75127 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.65
PTCD1O75127 SMG8-203ENST00000578922 2178 ntBASIC25.38■■□□□ 1.65
PTCD1O75127 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.38■■□□□ 1.65
PTCD1O75127 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTCD1O75127 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
PTCD1O75127 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTCD1O75127 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTCD1O75127 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PTCD1O75127 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC25.38■■□□□ 1.65
PTCD1O75127 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.38■■□□□ 1.65
PTCD1O75127 SLC25A1P4-201ENST00000567977 778 ntBASIC25.38■■□□□ 1.65
PTCD1O75127 AC087388.1-201ENST00000571370 1112 ntBASIC25.38■■□□□ 1.65
PTCD1O75127 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.38■■□□□ 1.65
PTCD1O75127 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC25.38■■□□□ 1.65
PTCD1O75127 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC25.38■■□□□ 1.65
PTCD1O75127 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PTCD1O75127 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
PTCD1O75127 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
PTCD1O75127 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
PTCD1O75127 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PTCD1O75127 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms