Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX1O00570 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX1O00570 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX1O00570 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.15■□□□□ 0.98
SOX1O00570 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SOX1O00570 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SOX1O00570 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX1O00570 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.15■□□□□ 0.98
SOX1O00570 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SOX1O00570 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SOX1O00570 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.14■□□□□ 0.98
SOX1O00570 AC016734.2-201ENST00000624325 1377 ntBASIC21.14■□□□□ 0.98
SOX1O00570 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.97
SOX1O00570 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.14■□□□□ 0.97
SOX1O00570 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.14■□□□□ 0.97
SOX1O00570 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.14■□□□□ 0.97
SOX1O00570 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.14■□□□□ 0.97
SOX1O00570 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.14■□□□□ 0.97
SOX1O00570 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SOX1O00570 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 AL645929.1-201ENST00000420084 975 ntBASIC21.13■□□□□ 0.97
SOX1O00570 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC21.13■□□□□ 0.97
SOX1O00570 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SOX1O00570 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.13■□□□□ 0.97
SOX1O00570 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 AC092865.5-201ENST00000545435 363 ntBASIC21.13■□□□□ 0.97
SOX1O00570 GCSHP2-201ENST00000560971 527 ntBASIC21.13■□□□□ 0.97
SOX1O00570 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 AL355385.1-201ENST00000606123 409 ntBASIC21.13■□□□□ 0.97
SOX1O00570 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
SOX1O00570 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.13■□□□□ 0.97
SOX1O00570 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX1O00570 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 HLA-A-201ENST00000376802 1334 ntBASIC21.12■□□□□ 0.97
SOX1O00570 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.12■□□□□ 0.97
SOX1O00570 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SOX1O00570 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
SOX1O00570 AL590627.1-203ENST00000421194 1026 ntBASIC21.12■□□□□ 0.97
SOX1O00570 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 AL662844.1-201ENST00000546340 181 ntBASIC21.12■□□□□ 0.97
SOX1O00570 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.12■□□□□ 0.97
SOX1O00570 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
SOX1O00570 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX1O00570 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SOX1O00570 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SOX1O00570 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.11■□□□□ 0.97
SOX1O00570 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.11■□□□□ 0.97
SOX1O00570 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SOX1O00570 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.11■□□□□ 0.97
SOX1O00570 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.11■□□□□ 0.97
SOX1O00570 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.11■□□□□ 0.97
SOX1O00570 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX1O00570 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.11■□□□□ 0.97
SOX1O00570 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SOX1O00570 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX1O00570 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX1O00570 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
SOX1O00570 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX1O00570 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SOX1O00570 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.1■□□□□ 0.97
SOX1O00570 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX1O00570 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.1■□□□□ 0.97
SOX1O00570 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX1O00570 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.1■□□□□ 0.97
SOX1O00570 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.1■□□□□ 0.97
SOX1O00570 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 BX119927.1-201ENST00000636596 1552 ntBASIC21.1■□□□□ 0.97
SOX1O00570 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX1O00570 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SOX1O00570 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SOX1O00570 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SOX1O00570 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms