Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC34.45■■■■□ 3.11
CCDC88BA6NC98 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
CCDC88BA6NC98 AC012676.1-201ENST00000574705 1949 ntBASIC34.45■■■■□ 3.11
CCDC88BA6NC98 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
CCDC88BA6NC98 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
CCDC88BA6NC98 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
CCDC88BA6NC98 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC34.45■■■■□ 3.1
CCDC88BA6NC98 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC34.45■■■■□ 3.1
CCDC88BA6NC98 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 AL031133.1-201ENST00000406807 723 ntBASIC34.44■■■■□ 3.1
CCDC88BA6NC98 AC004951.3-201ENST00000418645 1148 ntBASIC34.44■■■■□ 3.1
CCDC88BA6NC98 BX664615.1-201ENST00000443558 458 ntBASIC34.44■■■■□ 3.1
CCDC88BA6NC98 NMU-205ENST00000511469 756 ntTSL 3 BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC34.44■■■■□ 3.1
CCDC88BA6NC98 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC34.43■■■■□ 3.1
CCDC88BA6NC98 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
CCDC88BA6NC98 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC34.41■■■■□ 3.1
CCDC88BA6NC98 AC007663.1-201ENST00000438948 1240 ntBASIC34.41■■■■□ 3.1
CCDC88BA6NC98 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC34.41■■■■□ 3.1
CCDC88BA6NC98 YBX1P2-201ENST00000489612 999 ntBASIC34.41■■■■□ 3.1
CCDC88BA6NC98 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC34.41■■■■□ 3.1
CCDC88BA6NC98 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC34.41■■■■□ 3.1
CCDC88BA6NC98 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
CCDC88BA6NC98 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 SAPCD2P2-201ENST00000431719 1174 ntBASIC34.4■■■■□ 3.1
CCDC88BA6NC98 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 AC139887.4-201ENST00000607877 719 ntBASIC34.4■■■■□ 3.1
CCDC88BA6NC98 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC34.4■■■■□ 3.1
CCDC88BA6NC98 FAM207BP-201ENST00000447172 505 ntBASIC34.39■■■■□ 3.1
CCDC88BA6NC98 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 AC092338.2-201ENST00000568827 1415 ntBASIC34.39■■■■□ 3.1
CCDC88BA6NC98 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 AL023803.3-201ENST00000615559 522 ntBASIC34.39■■■■□ 3.1
CCDC88BA6NC98 TMEM179-206ENST00000616017 1645 ntBASIC34.39■■■■□ 3.1
CCDC88BA6NC98 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC34.39■■■■□ 3.1
CCDC88BA6NC98 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC34.38■■■■□ 3.09
CCDC88BA6NC98 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC34.38■■■■□ 3.09
CCDC88BA6NC98 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC34.38■■■■□ 3.09
CCDC88BA6NC98 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
CCDC88BA6NC98 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
CCDC88BA6NC98 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 UPK3BP1-201ENST00000428678 509 ntBASIC34.37■■■■□ 3.09
CCDC88BA6NC98 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC34.37■■■■□ 3.09
CCDC88BA6NC98 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
CCDC88BA6NC98 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC34.36■■■■□ 3.09
CCDC88BA6NC98 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC34.36■■■■□ 3.09
CCDC88BA6NC98 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
CCDC88BA6NC98 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
CCDC88BA6NC98 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC34.36■■■■□ 3.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms