Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL356585.10-201ENST00000641883 123 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AP002370.1-201ENST00000528055 1602 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL359263.1-201ENST00000441188 2796 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC007159.1-201ENST00000566529 4706 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 CASC19-248ENST00000641674 1356 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC129502.1-201ENST00000623261 1654 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC007998.4-201ENST00000612496 2533 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 GOT2P1-201ENST00000440922 1309 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RNU6-609P-201ENST00000365459 107 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 SNORA70H-201ENST00000383910 135 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 SNORA70J-201ENST00000384182 135 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RPL9P21-201ENST00000392269 505 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL589655.1-201ENST00000405398 482 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RPL12P10-201ENST00000413498 498 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 DHFRP2-201ENST00000414224 547 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RPSAP60-201ENST00000415403 880 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC013268.2-201ENST00000420753 337 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 ZBTB8OSP2-201ENST00000423890 504 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 SLC25A24P1-202ENST00000434803 1220 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MTND2P19-201ENST00000449129 1012 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC108734.3-201ENST00000481241 1165 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RN7SL423P-201ENST00000486202 304 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 SCARNA18.2-201ENST00000516882 84 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 OR4C1P-201ENST00000530880 937 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 ZDHHC20P3-201ENST00000531576 336 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC100832.2-201ENST00000582080 776 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 DIMT1P1-201ENST00000603970 763 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC026741.1-201ENST00000605892 482 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL365181.4-201ENST00000609800 547 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC104073.3-201ENST00000610942 955 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC004477.3-201ENST00000614061 590 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL357153.4-201ENST00000620487 1016 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC096708.4-201ENST00000620563 552 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC026124.2-201ENST00000621847 656 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AC087894.3-201ENST00000623682 349 ntBASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.86□□□□□ -1.15
CCDC39Q9UFE4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 RNU6-694P-201ENST00000364071 147 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 RNU6-891P-201ENST00000384280 111 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC073464.3-201ENST00000422564 712 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 CHCHD3P1-201ENST00000425516 676 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 SNX19-202ENST00000426933 888 ntTSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL512637.2-201ENST00000431287 1256 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 TRBV26OR9-2-201ENST00000432077 293 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 156.6 ms