Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.52□□□□□ -1.37
PTPN9P43378 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 AC073365.1-203ENST00000641055 1992 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 AL133243.2-201ENST00000610331 1621 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.51□□□□□ -1.37
PTPN9P43378 SNORA43.1-201ENST00000364863 140 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
PTPN9P43378 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.51□□□□□ -1.37
PTPN9P43378 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 RPL7AP51-201ENST00000422016 760 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 PPIAP10-201ENST00000438675 458 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 AC079922.1-201ENST00000443291 359 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 HIGD1AP16-201ENST00000450986 258 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 SNX18P24-201ENST00000505249 671 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 HNRNPRP2-201ENST00000528421 743 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 BTG1P1-201ENST00000540396 508 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 AC090115.2-201ENST00000548060 883 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.51□□□□□ -1.37
PTPN9P43378 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC6.51□□□□□ -1.37
PTPN9P43378 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 AC023389.2-201ENST00000580031 955 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 SETP3-201ENST00000581726 813 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.51□□□□□ -1.37
PTPN9P43378 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.51□□□□□ -1.37
PTPN9P43378 AC116667.2-201ENST00000641075 823 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.51□□□□□ -1.37
PTPN9P43378 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.51□□□□□ -1.37
PTPN9P43378 AL359976.1-201ENST00000418655 3528 ntBASIC6.51□□□□□ -1.37
PTPN9P43378 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PTPN9P43378 CCNT2P1-201ENST00000423082 1315 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.5□□□□□ -1.37
PTPN9P43378 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.5□□□□□ -1.37
PTPN9P43378 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.5□□□□□ -1.37
PTPN9P43378 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.5□□□□□ -1.37
PTPN9P43378 RN7SKP237-201ENST00000364663 301 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.5□□□□□ -1.37
PTPN9P43378 RPS17P17-201ENST00000419392 409 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 AC007562.1-201ENST00000421819 517 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 VN1R20P-201ENST00000425215 966 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 RSL24D1P8-201ENST00000434442 492 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 AC023274.2-201ENST00000445264 521 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 AC007383.1-201ENST00000445875 636 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 AC097359.1-201ENST00000447946 463 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.5□□□□□ -1.37
PTPN9P43378 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.5□□□□□ -1.37
PTPN9P43378 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC6.5□□□□□ -1.37
PTPN9P43378 AC116917.1-201ENST00000520558 305 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 AC036111.2-201ENST00000533247 901 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.5□□□□□ -1.37
PTPN9P43378 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.5□□□□□ -1.37
PTPN9P43378 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.5□□□□□ -1.37
PTPN9P43378 AL713998.2-201ENST00000604538 1198 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.5□□□□□ -1.37
PTPN9P43378 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.5□□□□□ -1.37
PTPN9P43378 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
PTPN9P43378 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.5□□□□□ -1.37
PTPN9P43378 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.49□□□□□ -1.37
PTPN9P43378 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.49□□□□□ -1.37
PTPN9P43378 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.49□□□□□ -1.37
PTPN9P43378 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PTPN9P43378 OR5T3-201ENST00000303059 1023 ntBASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms