Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 HBBP1-201ENST00000433329 439 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 AC245452.2-201ENST00000435222 392 ntBASIC6.39□□□□□ -1.39
MSX2P35548 H3F3BP1-201ENST00000440551 403 ntBASIC6.39□□□□□ -1.39
MSX2P35548 TXNP2-201ENST00000443918 295 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 AL139135.2-201ENST00000445040 433 ntBASIC6.39□□□□□ -1.39
MSX2P35548 GPR141-202ENST00000447769 1270 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 RN7SL187P-201ENST00000495587 303 ntBASIC6.39□□□□□ -1.39
MSX2P35548 MTND4P2-201ENST00000507767 1203 ntBASIC6.39□□□□□ -1.39
MSX2P35548 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX2P35548 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 ADI1P2-201ENST00000514945 429 ntBASIC6.39□□□□□ -1.39
MSX2P35548 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC6.39□□□□□ -1.39
MSX2P35548 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC6.39□□□□□ -1.39
MSX2P35548 OR52K3P-201ENST00000531655 943 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 ASB8-207ENST00000536953 923 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX2P35548 AC007537.1-201ENST00000539347 327 ntBASIC6.39□□□□□ -1.39
MSX2P35548 TDGP1-201ENST00000543961 1229 ntBASIC6.39□□□□□ -1.39
MSX2P35548 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC6.39□□□□□ -1.39
MSX2P35548 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 MTCYBP23-201ENST00000558717 1102 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX2P35548 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 EIF4A3P1-201ENST00000578499 647 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 VN1R81P-201ENST00000602085 372 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC012065.3-201ENST00000602736 439 ntBASIC6.39□□□□□ -1.39
MSX2P35548 RPS28P1-201ENST00000604589 187 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC113361.1-201ENST00000606683 543 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 AC013562.2-201ENST00000611632 603 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC245407.2-201ENST00000614199 451 ntBASIC6.39□□□□□ -1.39
MSX2P35548 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.39□□□□□ -1.39
MSX2P35548 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC010320.5-201ENST00000619124 676 ntBASIC6.39□□□□□ -1.39
MSX2P35548 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC079298.2-201ENST00000623885 459 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX2P35548 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
MSX2P35548 AP000577.1-201ENST00000624366 878 ntBASIC6.39□□□□□ -1.39
MSX2P35548 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX2P35548 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX2P35548 HSPD1P8-201ENST00000400121 1658 ntBASIC6.39□□□□□ -1.39
MSX2P35548 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX2P35548 CUBNP3-201ENST00000457461 1784 ntBASIC6.39□□□□□ -1.39
MSX2P35548 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 AC079753.1-201ENST00000623243 3868 ntBASIC6.38□□□□□ -1.39
MSX2P35548 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 RN7SKP28-201ENST00000364770 305 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 AP003170.5-201ENST00000397185 335 ntBASIC6.38□□□□□ -1.39
MSX2P35548 RPL5P19-201ENST00000404228 893 ntBASIC6.38□□□□□ -1.39
MSX2P35548 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.38□□□□□ -1.39
MSX2P35548 RNU4-27P-201ENST00000410889 139 ntBASIC6.38□□□□□ -1.39
MSX2P35548 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 AL606495.1-201ENST00000422100 813 ntBASIC6.38□□□□□ -1.39
MSX2P35548 ECHDC1-207ENST00000430841 1009 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 FTLP17-201ENST00000432567 525 ntBASIC6.38□□□□□ -1.39
MSX2P35548 RPSAP62-201ENST00000432596 833 ntBASIC6.38□□□□□ -1.39
MSX2P35548 TRAPPC13P1-201ENST00000435991 1062 ntBASIC6.38□□□□□ -1.39
MSX2P35548 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX2P35548 SOCS5P1-201ENST00000440415 949 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX2P35548 AC069540.1-201ENST00000446320 988 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC073072.2-201ENST00000447425 348 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms