Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
SCN4AP35499 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC7.18□□□□□ -1.26
SCN4AP35499 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.18□□□□□ -1.26
SCN4AP35499 AC005033.1-201ENST00000428904 813 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 EEF1B2P5-201ENST00000444820 548 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 AL450996.1-201ENST00000445574 1202 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.18□□□□□ -1.26
SCN4AP35499 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.18□□□□□ -1.26
SCN4AP35499 AL121579.2-201ENST00000555466 590 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.18□□□□□ -1.26
SCN4AP35499 AL359513.1-201ENST00000614364 557 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC7.18□□□□□ -1.26
SCN4AP35499 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 AL139805.2-201ENST00000455305 2433 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC7.18□□□□□ -1.26
SCN4AP35499 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
SCN4AP35499 NEK2P4-201ENST00000425793 1329 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 AL512310.3-201ENST00000547023 1335 ntBASIC7.18□□□□□ -1.26
SCN4AP35499 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.18□□□□□ -1.26
SCN4AP35499 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.18□□□□□ -1.26
SCN4AP35499 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.18□□□□□ -1.26
SCN4AP35499 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.18□□□□□ -1.26
SCN4AP35499 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
SCN4AP35499 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SCN4AP35499 U3.2-201ENST00000362981 210 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AL050335.1-201ENST00000396909 869 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 CBX1P2-201ENST00000453841 458 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 RPL35AP28-201ENST00000459730 331 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 RPL7AP6-201ENST00000477943 801 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 RPSAP50-201ENST00000481955 852 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.17□□□□□ -1.26
SCN4AP35499 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.17□□□□□ -1.26
SCN4AP35499 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.17□□□□□ -1.26
SCN4AP35499 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.17□□□□□ -1.26
SCN4AP35499 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 MIR223-201ENST00000385204 110 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 RPS15AP30-201ENST00000420976 390 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.17□□□□□ -1.26
SCN4AP35499 AL139156.3-201ENST00000454802 394 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AC023245.1-201ENST00000468501 517 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AC100832.1-201ENST00000471945 383 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 RPS17P15-201ENST00000475609 349 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 AP000676.2-201ENST00000529711 301 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.17□□□□□ -1.26
SCN4AP35499 MIR3691-201ENST00000578066 90 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
SCN4AP35499 AC141002.1-201ENST00000607025 279 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.17□□□□□ -1.26
SCN4AP35499 CASC19-264ENST00000641912 1184 ntBASIC7.17□□□□□ -1.26
SCN4AP35499 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.17□□□□□ -1.26
SCN4AP35499 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
SCN4AP35499 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SCN4AP35499 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
SCN4AP35499 YES1P1-201ENST00000418510 1628 ntBASIC7.16□□□□□ -1.26
SCN4AP35499 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SCN4AP35499 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
SCN4AP35499 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.16□□□□□ -1.26
SCN4AP35499 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SCN4AP35499 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms