Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH3P20585 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
MSH3P20585 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
MSH3P20585 RNU11-6P-201ENST00000391127 133 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AL445238.1-204ENST00000400311 463 ntBASIC6.2□□□□□ -1.42
MSH3P20585 RN7SKP121-201ENST00000410842 305 ntBASIC6.2□□□□□ -1.42
MSH3P20585 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH3P20585 IGLV3-4-201ENST00000432300 244 ntBASIC6.2□□□□□ -1.42
MSH3P20585 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH3P20585 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH3P20585 AL157385.1-201ENST00000446973 268 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AL133351.3-201ENST00000454998 193 ntBASIC6.2□□□□□ -1.42
MSH3P20585 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.2□□□□□ -1.42
MSH3P20585 RN7SL362P-201ENST00000494228 267 ntBASIC6.2□□□□□ -1.42
MSH3P20585 RNA5SP441-201ENST00000516809 88 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AP003080.1-202ENST00000526526 915 ntBASIC6.2□□□□□ -1.42
MSH3P20585 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH3P20585 OR4A6P-201ENST00000534364 970 ntBASIC6.2□□□□□ -1.42
MSH3P20585 TRAV11-201ENST00000539512 339 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.2□□□□□ -1.42
MSH3P20585 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.2□□□□□ -1.42
MSH3P20585 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH3P20585 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC6.2□□□□□ -1.42
MSH3P20585 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH3P20585 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
MSH3P20585 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH3P20585 AL135999.3-201ENST00000610501 812 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AC010998.3-201ENST00000613871 631 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AL162377.2-201ENST00000624532 337 ntBASIC6.2□□□□□ -1.42
MSH3P20585 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.2□□□□□ -1.42
MSH3P20585 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
MSH3P20585 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH3P20585 AC092692.1-201ENST00000623625 2595 ntBASIC6.2□□□□□ -1.42
MSH3P20585 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSH3P20585 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH3P20585 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSH3P20585 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.2□□□□□ -1.42
MSH3P20585 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH3P20585 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
MSH3P20585 DNM1P47-203ENST00000571780 12667 ntBASIC6.19□□□□□ -1.42
MSH3P20585 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.19□□□□□ -1.42
MSH3P20585 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH3P20585 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.19□□□□□ -1.42
MSH3P20585 RNA5SP346-201ENST00000363541 121 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH3P20585 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 RPL7P58-201ENST00000402913 758 ntBASIC6.19□□□□□ -1.42
MSH3P20585 RN7SKP86-201ENST00000410454 332 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH3P20585 RPS7P14-201ENST00000426405 583 ntBASIC6.19□□□□□ -1.42
MSH3P20585 NPM1P25-201ENST00000429734 854 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH3P20585 TIMM8BP2-201ENST00000445940 251 ntBASIC6.19□□□□□ -1.42
MSH3P20585 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.19□□□□□ -1.42
MSH3P20585 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH3P20585 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 RNU6-775P-201ENST00000459318 96 ntBASIC6.19□□□□□ -1.42
MSH3P20585 OR7E22P-201ENST00000478335 1035 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AC106822.1-201ENST00000502647 526 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AC112484.3-201ENST00000505910 329 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AC095052.1-201ENST00000509955 863 ntBASIC6.19□□□□□ -1.42
MSH3P20585 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.19□□□□□ -1.42
MSH3P20585 ZNF519P4-201ENST00000514008 125 ntBASIC6.19□□□□□ -1.42
MSH3P20585 RN7SKP67-201ENST00000515905 235 ntBASIC6.19□□□□□ -1.42
MSH3P20585 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH3P20585 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH3P20585 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH3P20585 AL078601.3-201ENST00000573303 535 ntBASIC6.19□□□□□ -1.42
MSH3P20585 MIR3154-201ENST00000577829 84 ntBASIC6.19□□□□□ -1.42
MSH3P20585 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.19□□□□□ -1.42
MSH3P20585 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.19□□□□□ -1.42
MSH3P20585 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH3P20585 AC022726.2-201ENST00000634673 547 ntBASIC6.19□□□□□ -1.42
MSH3P20585 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH3P20585 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.19□□□□□ -1.42
MSH3P20585 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH3P20585 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 PPBPP2-201ENST00000513150 1362 ntBASIC6.18□□□□□ -1.42
MSH3P20585 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
MSH3P20585 BX284613.1-201ENST00000452221 1641 ntBASIC6.18□□□□□ -1.42
MSH3P20585 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
MSH3P20585 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH3P20585 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
MSH3P20585 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms