Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 LINC02019-201ENST00000608605 2060 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC019178.1-201ENST00000392337 440 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 SNORA77.2-201ENST00000408571 112 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 GAPDHP14-201ENST00000450472 937 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AL133480.2-201ENST00000456723 487 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AL133232.1-201ENST00000458293 483 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 RN7SL643P-201ENST00000471845 291 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC010409.2-201ENST00000505780 478 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC093870.1-201ENST00000506837 213 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 snoU109.5-201ENST00000516231 132 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 TPM3P3-201ENST00000521343 354 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AL137067.2-201ENST00000621202 131 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 HSPD1P1-201ENST00000503199 1726 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 AC015689.2-201ENST00000528172 1738 ntBASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC28BQ9BUN5 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC114774.1-201ENST00000507410 1770 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 NPM1P38-201ENST00000403835 865 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 PTCD2P2-201ENST00000415579 1095 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL589794.1-201ENST00000424971 390 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 VN1R53P-201ENST00000429536 957 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 RPSAP41-201ENST00000439695 860 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 COL11A2P1-205ENST00000441798 676 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL845321.1-201ENST00000444603 348 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 RPL23AP60-201ENST00000450011 454 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC022080.2-201ENST00000452932 533 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AKR1D1P1-201ENST00000457236 936 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC018645.1-201ENST00000505003 109 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 TOMM22P4-201ENST00000511318 336 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC020937.1-201ENST00000519677 1013 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC133552.4-201ENST00000576103 676 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 SYPL1P2-201ENST00000582878 727 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 MIR4660-201ENST00000583549 74 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 RPL29P33-201ENST00000587474 316 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC006363.1-201ENST00000603806 463 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC009283.1-201ENST00000615852 645 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AC002525.1-201ENST00000624392 1622 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL078595.2-201ENST00000605309 1780 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 AL162456.1-201ENST00000634535 2006 ntBASIC5.98□□□□□ -1.45
CCDC28BQ9BUN5 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms