Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
PTPN9P43378 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
PTPN9P43378 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.53□□□□□ -1.36
PTPN9P43378 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.53□□□□□ -1.36
PTPN9P43378 AKAP17BP-201ENST00000431706 2719 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.53□□□□□ -1.36
PTPN9P43378 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.53□□□□□ -1.36
PTPN9P43378 LCN1P2-201ENST00000372030 223 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 PSMA6P1-201ENST00000400275 741 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.53□□□□□ -1.36
PTPN9P43378 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.53□□□□□ -1.36
PTPN9P43378 NDUFA5P8-201ENST00000449019 346 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.53□□□□□ -1.36
PTPN9P43378 RARRES2P3-201ENST00000457739 473 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 AP002371.1-201ENST00000463604 433 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 H3F3AP5-201ENST00000475267 429 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.53□□□□□ -1.36
PTPN9P43378 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.53□□□□□ -1.36
PTPN9P43378 OR6M2P-201ENST00000529831 871 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC135626.1-201ENST00000556983 435 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 MIR3908-201ENST00000579798 126 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 NPIPB1P-202ENST00000588786 828 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 WBP1LP12-201ENST00000604449 331 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 AL591167.1-201ENST00000607321 456 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC005899.7-201ENST00000618199 588 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 AC099654.15-201ENST00000639802 509 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 SHQ1P1-201ENST00000437111 1544 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 HDAC1P2-201ENST00000453661 1398 ntBASIC6.53□□□□□ -1.36
PTPN9P43378 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.53□□□□□ -1.36
PTPN9P43378 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
PTPN9P43378 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.53□□□□□ -1.36
PTPN9P43378 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.52□□□□□ -1.36
PTPN9P43378 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
PTPN9P43378 AC096921.2-201ENST00000561507 1916 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AP001541.1-201ENST00000623322 1904 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
PTPN9P43378 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
PTPN9P43378 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 RNU1-49P-201ENST00000363468 159 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 RNA5SP346-201ENST00000363541 121 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.52□□□□□ -1.37
PTPN9P43378 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AL139805.1-201ENST00000407837 289 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
PTPN9P43378 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.52□□□□□ -1.37
PTPN9P43378 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
PTPN9P43378 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.52□□□□□ -1.37
PTPN9P43378 AL133351.3-201ENST00000454998 193 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AL022319.1-201ENST00000458183 1167 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.52□□□□□ -1.37
PTPN9P43378 RN7SL836P-201ENST00000476140 296 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 GUSBP9-201ENST00000510138 584 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.52□□□□□ -1.37
PTPN9P43378 AC005632.2-201ENST00000564271 828 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AL162574.2-201ENST00000614618 657 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 AL354696.1-201ENST00000614652 497 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 MIR6813-201ENST00000621638 56 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 AC003992.1-201ENST00000635364 557 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 AC132825.8-201ENST00000640783 297 ntBASIC6.52□□□□□ -1.37
PTPN9P43378 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.52□□□□□ -1.37
PTPN9P43378 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 288.2 ms