Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RN7SKP161-201ENST00000411110 305 ntBASIC5.85□□□□□ -1.47
SOX3P41225 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.85□□□□□ -1.47
SOX3P41225 AC094019.1-201ENST00000434678 472 ntBASIC5.85□□□□□ -1.47
SOX3P41225 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.85□□□□□ -1.47
SOX3P41225 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.85□□□□□ -1.47
SOX3P41225 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SOX3P41225 AC068491.1-201ENST00000449539 1241 ntBASIC5.85□□□□□ -1.47
SOX3P41225 CTSLP6-201ENST00000458273 1002 ntBASIC5.85□□□□□ -1.47
SOX3P41225 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
SOX3P41225 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.85□□□□□ -1.47
SOX3P41225 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SOX3P41225 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.85□□□□□ -1.47
SOX3P41225 AC005332.4-201ENST00000592752 579 ntBASIC5.85□□□□□ -1.47
SOX3P41225 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 AC079791.1-201ENST00000605356 973 ntBASIC5.85□□□□□ -1.47
SOX3P41225 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 SNORA74.4-201ENST00000607595 199 ntBASIC5.85□□□□□ -1.47
SOX3P41225 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 AC073592.6-201ENST00000624271 415 ntBASIC5.85□□□□□ -1.47
SOX3P41225 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.85□□□□□ -1.47
SOX3P41225 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 AL731532.1-201ENST00000623972 4236 ntBASIC5.85□□□□□ -1.47
SOX3P41225 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SOX3P41225 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 OOSP1-201ENST00000398992 1270 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AL035422.1-201ENST00000414193 397 ntBASIC5.84□□□□□ -1.47
SOX3P41225 RPL7AP14-201ENST00000424041 802 ntBASIC5.84□□□□□ -1.47
SOX3P41225 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 AC092865.3-201ENST00000425390 1026 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 AL645936.1-201ENST00000441979 518 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 RN7SL170P-201ENST00000487098 295 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.84□□□□□ -1.47
SOX3P41225 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 MIR4502-201ENST00000580432 81 ntBASIC5.84□□□□□ -1.47
SOX3P41225 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.84□□□□□ -1.47
SOX3P41225 MIR4271-201ENST00000582451 67 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AC233702.7-202ENST00000582941 211 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX3P41225 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC5.84□□□□□ -1.47
SOX3P41225 AL138960.1-201ENST00000613838 513 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AP003072.5-201ENST00000623872 773 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AC073593.1-201ENST00000624500 411 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AL162377.2-201ENST00000624532 337 ntBASIC5.84□□□□□ -1.47
SOX3P41225 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.84□□□□□ -1.47
SOX3P41225 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SOX3P41225 AP000641.1-201ENST00000531988 1639 ntBASIC5.84□□□□□ -1.47
SOX3P41225 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.84□□□□□ -1.47
SOX3P41225 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.84□□□□□ -1.48
SOX3P41225 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.84□□□□□ -1.48
SOX3P41225 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SOX3P41225 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 AC027575.3-201ENST00000583058 2747 ntBASIC5.83□□□□□ -1.48
SOX3P41225 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX3P41225 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX3P41225 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 AC105235.1-201ENST00000623208 1816 ntBASIC5.83□□□□□ -1.48
SOX3P41225 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
SOX3P41225 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SOX3P41225 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SOX3P41225 RNU1-59P-201ENST00000364829 162 ntBASIC5.83□□□□□ -1.48
SOX3P41225 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX3P41225 CXADRP1-201ENST00000398098 1095 ntBASIC5.83□□□□□ -1.48
SOX3P41225 AL139805.1-201ENST00000407837 289 ntBASIC5.83□□□□□ -1.48
SOX3P41225 SNORA11.5-201ENST00000408163 128 ntBASIC5.83□□□□□ -1.48
SOX3P41225 U3.43-201ENST00000410734 213 ntBASIC5.83□□□□□ -1.48
SOX3P41225 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SOX3P41225 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX3P41225 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.83□□□□□ -1.48
SOX3P41225 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX3P41225 SOCS5P1-201ENST00000440415 949 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms