Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 HDAC1P2-201ENST00000453661 1398 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MSL3P1-202ENST00000440028 1468 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 CYP2AC1P-201ENST00000407830 1173 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 SETP9-201ENST00000423837 832 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 NPM1P25-201ENST00000429734 854 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 LINC00328-2P-201ENST00000436585 219 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC079922.1-201ENST00000443291 359 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC112187.1-201ENST00000455837 479 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 SNRPCP3-201ENST00000474888 476 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 RN7SL714P-201ENST00000487050 298 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AL117692.1-201ENST00000494283 713 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 RN7SKP183-201ENST00000517169 324 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC092865.1-201ENST00000544395 1023 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 SYPL1P2-201ENST00000582878 727 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC005332.4-201ENST00000592752 579 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC012368.3-201ENST00000604190 219 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC003992.1-201ENST00000635364 557 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 AC022164.1-201ENST00000568767 2673 ntBASIC4.74□□□□□ -1.65
HLA-DMBP28068 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
HLA-DMBP28068 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HLA-DMBP28068 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 AC092692.1-201ENST00000623625 2595 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 CAP1P2-201ENST00000417455 1409 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 AC090181.3-201ENST00000624777 1514 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HLA-DMBP28068 RNA5SP485-201ENST00000365053 119 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 RNU11-201ENST00000387069 134 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 HMGA1P8-201ENST00000414130 321 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 AKR1B10P1-201ENST00000425765 942 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 AC021876.1-201ENST00000425959 359 ntBASIC4.73□□□□□ -1.65
HLA-DMBP28068 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 HCG14-201ENST00000444986 413 ntTSL 2 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC4.73□□□□□ -1.65
HLA-DMBP28068 COX4I1P2-201ENST00000447446 547 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms