Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL5A3P25940 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.45□□□□□ -1.22
COL5A3P25940 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL5A3P25940 CR383656.5-201ENST00000547616 1340 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL5A3P25940 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.44□□□□□ -1.22
COL5A3P25940 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC7.44□□□□□ -1.22
COL5A3P25940 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 AL133173.1-201ENST00000423458 397 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 AC006335.2-201ENST00000437993 330 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 OTX2P1-201ENST00000450956 354 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 RN7SL860P-201ENST00000473738 223 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 BX284632.1-201ENST00000478218 541 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 OR4A42P-201ENST00000531397 938 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.44□□□□□ -1.22
COL5A3P25940 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC092944.2-201ENST00000605443 889 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 MIR6798-201ENST00000612887 67 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.44□□□□□ -1.22
COL5A3P25940 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC011504.1-201ENST00000623331 4103 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 PRUNEP1-201ENST00000425846 705 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC245047.2-201ENST00000441060 530 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 OR13K1P-201ENST00000444577 975 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 AL450023.1-201ENST00000450868 751 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 RN7SL184P-201ENST00000488308 297 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.44□□□□□ -1.22
COL5A3P25940 IGLV2-28-201ENST00000520681 304 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.44□□□□□ -1.22
COL5A3P25940 AC037198.3-201ENST00000616754 526 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 AC118658.2-201ENST00000618697 459 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 AC008115.4-201ENST00000619780 775 ntBASIC7.44□□□□□ -1.22
COL5A3P25940 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC7.44□□□□□ -1.22
COL5A3P25940 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.44□□□□□ -1.22
COL5A3P25940 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL5A3P25940 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
COL5A3P25940 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.43□□□□□ -1.22
COL5A3P25940 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC7.43□□□□□ -1.22
COL5A3P25940 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL5A3P25940 AL159987.1-201ENST00000347911 293 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 AL357752.1-201ENST00000412817 349 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.43□□□□□ -1.22
COL5A3P25940 AC019185.1-201ENST00000442718 389 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 AC004815.1-201ENST00000484185 331 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC7.43□□□□□ -1.22
COL5A3P25940 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.43□□□□□ -1.22
COL5A3P25940 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL5A3P25940 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 AC018809.2-201ENST00000602436 3823 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 SAMMSON-227ENST00000642114 1199 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 CYP4Z2P-201ENST00000423332 1512 ntBASIC7.43□□□□□ -1.22
COL5A3P25940 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.43□□□□□ -1.22
COL5A3P25940 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
COL5A3P25940 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL5A3P25940 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms