Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.83□□□□□ -1.32
BDNFP23560 TRIM60P17-201ENST00000415181 719 ntBASIC6.83□□□□□ -1.32
BDNFP23560 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BDNFP23560 AC002127.1-201ENST00000421305 225 ntBASIC6.83□□□□□ -1.32
BDNFP23560 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.83□□□□□ -1.32
BDNFP23560 RN7SL168P-201ENST00000463821 279 ntBASIC6.83□□□□□ -1.32
BDNFP23560 AC104339.1-201ENST00000465478 348 ntBASIC6.83□□□□□ -1.32
BDNFP23560 AC026254.2-201ENST00000475295 371 ntBASIC6.83□□□□□ -1.32
BDNFP23560 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.83□□□□□ -1.32
BDNFP23560 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
BDNFP23560 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.83□□□□□ -1.32
BDNFP23560 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.83□□□□□ -1.32
BDNFP23560 AC008055.1-201ENST00000547032 609 ntBASIC6.83□□□□□ -1.32
BDNFP23560 RN7SL475P-201ENST00000583379 298 ntBASIC6.83□□□□□ -1.32
BDNFP23560 AL589863.1-201ENST00000595383 631 ntBASIC6.83□□□□□ -1.32
BDNFP23560 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC6.83□□□□□ -1.32
BDNFP23560 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.83□□□□□ -1.32
BDNFP23560 AC006840.1-201ENST00000623069 542 ntBASIC6.83□□□□□ -1.32
BDNFP23560 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.83□□□□□ -1.32
BDNFP23560 AC099654.6-201ENST00000636487 512 ntBASIC6.83□□□□□ -1.32
BDNFP23560 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.83□□□□□ -1.32
BDNFP23560 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.83□□□□□ -1.32
BDNFP23560 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.83□□□□□ -1.32
BDNFP23560 AC062022.1-201ENST00000451026 1684 ntBASIC6.83□□□□□ -1.32
BDNFP23560 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
BDNFP23560 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.83□□□□□ -1.32
BDNFP23560 AL356317.1-201ENST00000396110 1436 ntBASIC6.83□□□□□ -1.32
BDNFP23560 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.83□□□□□ -1.32
BDNFP23560 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BDNFP23560 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.83□□□□□ -1.32
BDNFP23560 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
BDNFP23560 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 AC083837.1-201ENST00000565297 2994 ntBASIC6.82□□□□□ -1.32
BDNFP23560 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 RNU4-23P-201ENST00000362839 140 ntBASIC6.82□□□□□ -1.32
BDNFP23560 MT-RNR1-201ENST00000389680 954 ntBASIC6.82□□□□□ -1.32
BDNFP23560 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 RPL21P50-201ENST00000417698 477 ntBASIC6.82□□□□□ -1.32
BDNFP23560 OSTCP4-201ENST00000424397 449 ntBASIC6.82□□□□□ -1.32
BDNFP23560 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 OR2L9P-201ENST00000444456 913 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC6.82□□□□□ -1.32
BDNFP23560 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 RN7SL552P-201ENST00000462094 276 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC105918.1-201ENST00000474399 838 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC128716.1-201ENST00000475129 166 ntBASIC6.82□□□□□ -1.32
BDNFP23560 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.82□□□□□ -1.32
BDNFP23560 SNORA58-201ENST00000505219 137 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC113367.2-201ENST00000505749 160 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC112484.3-201ENST00000505910 329 ntBASIC6.82□□□□□ -1.32
BDNFP23560 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 RNA5SP473-201ENST00000516402 125 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC6.82□□□□□ -1.32
BDNFP23560 CYCSP25-201ENST00000525280 316 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 AC009729.1-201ENST00000548873 1133 ntBASIC6.82□□□□□ -1.32
BDNFP23560 TPRX1P1-201ENST00000557620 319 ntBASIC6.82□□□□□ -1.32
BDNFP23560 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 OR1E3-201ENST00000575608 948 ntBASIC6.82□□□□□ -1.32
BDNFP23560 MIR3154-201ENST00000577829 84 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC6.82□□□□□ -1.32
BDNFP23560 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC6.82□□□□□ -1.32
BDNFP23560 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 AC020915.5-201ENST00000596836 964 ntBASIC6.82□□□□□ -1.32
BDNFP23560 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.82□□□□□ -1.32
BDNFP23560 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.82□□□□□ -1.32
BDNFP23560 AC020765.1-201ENST00000604296 328 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 AP002345.2-201ENST00000609961 904 ntBASIC6.82□□□□□ -1.32
BDNFP23560 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.82□□□□□ -1.32
BDNFP23560 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 AL445647.2-201ENST00000615170 130 ntBASIC6.82□□□□□ -1.32
BDNFP23560 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 MIR6806-201ENST00000622141 64 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AL683826.1-201ENST00000624104 627 ntBASIC6.82□□□□□ -1.32
BDNFP23560 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.82□□□□□ -1.32
BDNFP23560 AC111152.1-202ENST00000635848 339 ntBASIC6.82□□□□□ -1.32
BDNFP23560 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 AC074141.1-201ENST00000588129 2995 ntBASIC6.82□□□□□ -1.32
BDNFP23560 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.82□□□□□ -1.32
BDNFP23560 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
BDNFP23560 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms