Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC7.35□□□□□ -1.23
COL6A1P12109 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC7.35□□□□□ -1.23
COL6A1P12109 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC7.35□□□□□ -1.23
COL6A1P12109 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 SNORA51.9-201ENST00000384295 124 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC7.35□□□□□ -1.23
COL6A1P12109 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL6A1P12109 DHFRP2-201ENST00000414224 547 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC7.35□□□□□ -1.23
COL6A1P12109 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC7.35□□□□□ -1.23
COL6A1P12109 AC007064.3-201ENST00000422608 359 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 MTND6P12-201ENST00000428247 522 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 CDY8P-201ENST00000428380 1279 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
COL6A1P12109 CXCR2P1-202ENST00000443392 1074 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 CDY20P-201ENST00000447528 1279 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 MTND1P31-201ENST00000449206 961 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 CLIC4P1-201ENST00000453177 535 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC7.35□□□□□ -1.23
COL6A1P12109 HLA-DPA3-207ENST00000454398 229 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 VPS25P1-201ENST00000455691 508 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC135721.2-201ENST00000464237 300 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC108729.2-201ENST00000476543 840 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC016687.1-201ENST00000482574 353 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 RPS4XP23-201ENST00000487801 237 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC093763.2-201ENST00000505334 1223 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC006499.4-201ENST00000510947 694 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC7.35□□□□□ -1.23
COL6A1P12109 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC7.35□□□□□ -1.23
COL6A1P12109 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC7.35□□□□□ -1.23
COL6A1P12109 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC7.35□□□□□ -1.23
COL6A1P12109 AL162632.2-201ENST00000553933 399 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC7.35□□□□□ -1.23
COL6A1P12109 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC7.35□□□□□ -1.23
COL6A1P12109 AC012414.2-201ENST00000559474 187 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.35□□□□□ -1.23
COL6A1P12109 AP003115.1-201ENST00000569849 463 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC7.35□□□□□ -1.23
COL6A1P12109 FAM72A-208ENST00000607379 1139 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC092266.1-201ENST00000610958 165 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC009464.1-201ENST00000615731 469 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 AC106754.1-201ENST00000562632 1513 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.35□□□□□ -1.23
COL6A1P12109 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 CA10-204ENST00000570565 2276 ntTSL 5 BASIC7.35□□□□□ -1.23
COL6A1P12109 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 TMC3-AS1-206ENST00000612811 2726 ntBASIC7.35□□□□□ -1.23
COL6A1P12109 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL6A1P12109 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 MTND5P31-201ENST00000419366 1374 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 HSPD1P9-201ENST00000420325 1636 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC7.34□□□□□ -1.23
COL6A1P12109 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 OR4C1P-202ENST00000641065 1569 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC7.34□□□□□ -1.23
COL6A1P12109 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
COL6A1P12109 VTRNA3-1P-201ENST00000362552 102 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 AL157702.1-201ENST00000398764 426 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 Z93019.1-201ENST00000416450 973 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 VPS26BP1-201ENST00000417155 755 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
COL6A1P12109 SETP9-201ENST00000423837 832 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC099063.2-201ENST00000446360 662 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 HGF-207ENST00000453018 721 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 MTCO2P6-201ENST00000463134 685 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 RN7SL273P-201ENST00000481561 299 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 PSMA2P2-201ENST00000504319 686 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 PTTG3P-201ENST00000521862 606 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 TBCA-209ENST00000522370 435 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 AC130364.2-201ENST00000528639 604 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms